Detail


ID : Ahg475104

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|475104|fgenesh2_kg.2__234__AT1G62390.1
Sequence
GAGCTAGGGT TTCTAGTTTT TCAAAACCCC GTCAGGCTCA TCTTCTTCTA GCACCTTCTT CTTCCCTTAA AGTATTCAAC TTTATCTGAA TTTCACCATT TTCTCTTCAT TTCTCCTACT AATTTCGATC TTTAAGCATC TGGGTATCTC CCTTTCTCCA TCTATTCATC GGAATTTGGG CTTAGATTTC GAAATTCTGA AGCTTTTTGG GGAAGACGAG ATTGAAAATG GGGAAATCTG GAGGAAGGAA GAAGAAGAGT GGTGGTGGTG GTTCGAATGC GAATTCGAAT TCGAGTCAAG TCAATTCATC TGAAGCTTCA GGATTATCGA AACCGTCAAC GATTGTTAAT GGTGGTGTTG ATTTCGATGC TTCGATATTC TTGAAACGTG CACATGAGCT TAAGGAAGAA GGTAATAAAA AGTTTCAAGC AAGAGATTAT ATTGGTGCTC TTGAGCAATA CGAGAATGGG ATTAAGCTTA TTCCTAAGAA TCATCCAGAT AGAGCTGTGT TTCATAGCAA TAGAGCTGCT TGTTTGATGC AAATGAAGCC AATTGATTAT GAATCTGTGA TTTCTGAATG TTCTTTGGCT CTTAAATCTC AGCCTGGTTT TACTAGAGCT TTACTTAGAA GAGCTAGAGC TTTTGAAGCT GTTGGCAAGT TTGATTTAGC TGTTCAGGAT GTCAATGTTT TGTTGGGTTC TGATCCTAAT CATAAGGATG CTGGTGAGAT TTCCAAGCGG TTAAAAACCG CTTTGGGTCC TCATCAAGAT TTGCAGAGTC GTCCTTCACC TGCAGCTCTT GGTGCTTCGG CTGCGTTAGG CGGTCCGATT GCTGGACTTG GTCCTTGTTT ACCTTCTCGT AATGTTCATA AAAAGGGTGT TGCTTCGCCT GTTGGGTCTG TTTCGTTGCC TAATGCTAGT AATGGTAAGG TTGAGAGGCC CCAGGTGGTG AATCCTGTGA CTGAAAATGG CGGTTCAGTG AGTAAGGGAC AGGCGTCGAG AGTTGTGTTG AAGCCGGTTA GTCATTCACC GAAAGGGTCG AAGGTGGAGG AGTTGGGTTC TTCATCTGTG GCTGTTGTTG AGAAGGTTCA AGAGAAGAGG ATTCGGTGGA GGCCGTTGAA GTTTGTTTAT GATCATGACA TAAGGTTGGG TCAGATGCCT GTGAACTGTA GGTTTAAGGA ATTGAGAGAG ATTGTGAGCA GTCGTTTCCC GTCTTCGAAG GCGGTTTTGA TTAAGTACAA GGACAATGAT GGAGATTTGG TGACTATAAC TTCTACTGCA GAGCTGAAAT TGGCGGAATC TGCTGCTGAT AGTCTTTTGA CGAAAGAGCC TGATACTGAT AAGTCTGATT CTGTTGGGAT ATTGAGATTG CATGTTGTTG ATGTGAGTCC TGAGCAAGAG CCGATGTTGC TAGAGGAAGA AGAGGAGGAA GTGGAAGAGA AGCCTGTTGT AGAAGAAGTC ATATCATCTC CTACAGAATC AGTATCTGAA ACAGAGATCA ACAATGAGAA GACGGATAAG GAAGTTGAAA AGGAGAAAGC GGGTTCTTCT GAAGATCCTG AGACCAAGGA ATTGGAGATG GATGATTGGT TGTTTGATTT TGCTCATCTC TTCCGTACTC ATGTTGGTAT TGACCCTGAT GCTCATATTG ACTTGCATGA GTTGGGAATG GAGCTCTGCT CAGAGGCGCT TGAAGAAACT GTGACAAGCG AGAAAGCTCA ACCACTATTC GATAAAGCTT CTGCGAAATT CCAAGAAGTC GCTGCTTTAG CTTTCTTCAA CTGGGGAAAT GTTCACATGT GTGCTGCTAG AAAGAGGATT CCTTTAGACG AATCTGCAGG AAAAGAAGTG GTTGCAGCAC AGCTTCAAAC CGCTTACGAG TGGGTGAAAG AGAGATACAC ATTGGCCAAG GAGAAATATG AGCAGGCCCT CTCTATCAAA CCAGATTTTT ACGAGGGTTT GCTTGCTTTA GGACAGCAGC AATTTGAAAT GGCGAAGCTA CACTGGTCTT ACTTGCTAGC TCAGAAGATC GATATCTCAG GTTGGGATCC GTCGGAAACC TTAAATCTCT TTGACAGCGC AGAGGCAAAG ATGAAAGATG CTACAGAGAT GTGGGAGAAG CTTGAAGAGC AGAGGATGGA TGATCTTAAA AACCCGAACT CGAACAAGAA AGAGGAAGTT TCTAAGAGGA GAAAGAAGCA AGGAGGAGAT GGGAGTGAAG AGGTTTCAGA AACAATCACA GCTGAGGAAG CAGCAGAACA AGCGACTGCA ATGAGATCAC AGATCCATTT GTTTTGGGGA AACATGCTGT TCGAAAGATC GCAAGTTGAA TGCAAAATCG GGAGGGATGG TTGGAATAAG AATCTTGATT CAGCTGTTGA AAGATTCAAA CTTGCAGGTG CTTCTGAAGC TGACATAGCA ATGGTCGTCA AGAATCATTG TTCCAATGAA GTCGCTGCTA CTGAAGGAGA TGAGAAAAAG GTACCTGCAC CTTGATTGTT TTTGCTTTAG GGATTGATTC TTCTGAACTT GCTTCTTCTT ATCTAATGAT AAAAGCTACT TTAGCTTCAT TTGTGTTAAG TTCTG
Length2585
Protein Sequence
Protein Residue
Map Locationscaffold_2: 1629067.. 1631893
Download Sequence
A.thaliana
AGI-codeAT1G62390.1
DescriptionOcticosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
TAIR curator summary
Alias[CLMP1][Phox2][CLUMPED CHLOROPLASTS 1][Phox2]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg491060 RNA polymerase II large subunit
7 Ahg324617 embryo defective 1703
10.5357 Ahg486312 ketol-acid reductoisomerase
14.6969 Ahg942027 Protein of unknown function (DUF3411)
16.7332 Ahg937391 translocon at the outer envelope membrane of chloroplasts 75-III
17.2047 Ahg476596 NAP1-related protein 1
17.4929 Ahg483616 Ribosomal protein L24e family protein
18.3303 Ahg938261 diaminopimelate epimerase family protein
18.5742 Ahg942753 RH39
20.8806 Ahg492423 chloroplast heat shock protein 70-1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression