| Annotation |
|---|
| Description | jgi|Araly1|491060|fgenesh2_kg.7__493__AT4G35800.1 |
| Sequence |
ATGGATACGA GGTTTCCGTT CTCACCGGCC GAGGTCTCTA AAGTCCGGGT GGTCCAGTTT GGCATACTCA GCCCCGATGA GATCAGGCAA ATGTCTGTTA TACATGTTGA GCATAGTGAG ACGACCGAGA AGGGTAAACC TAAGGTTGGA GGGTTGAGTG ATATCCGGCT TGGTACCATT GATCGGAAGG TGAAGTGTGA GACATGTATG GCTAATATGG CTGAGTGTCC GGGACATTTT GGCCATCTTG AGCTCGCTAA GCCAATGTAT CATGTCGGTT TTATGAAGAC GGTGTTAAGC ATCATGAGAT GTGTCTGCTT CAATTGCTCC AAGATTTTAG CTGATGAGGT ATGTAGGAAC TTATCTCGTC AGGCTATGAA GATAAAGAAC CCCAAGAATA GGCTTAAGAA GATTCTGGAT GCCTGTAAAA ACAAGACCAA ATGTGAAGGT GGTGATGATA TTGATGATGT CCAGAACCAA GACACTGACG AACCAGTAAA AAAGAGCCGA GGTGGATGTG GTGCACAACA ACCAAAGCTG ACTATTGAGG GTATGAAGAT GATTGCAGAA TACAAAATTC CAAGGAAGAA AAACGATGAG CCAGACCAGC TTCCGGAGCC TGCAGAAAGG AAACAGACAC TTGGTGCTGA TAGGGTTTTG AGTGTTTTGA AGAGGATTAG TGATGAGGAT TGTCAACTCC TAGGGTTCAA CCCTAAGTTT GCTCGTCCTG ACTGGATGAT TCTTGAAGTC CTTCCTATTC CTCCACCCCC TGTCAGACCA TCTGTAATGA TGGATGCCAC TTCCAGAAGT GAGGATGACT TGACCCATCA GCTAGCCATG ATTATTCGAC ACAATGAAAA CTTGAAAAGG CAGGAAAAAA ATGGAGCGCC AGCTCATATT ATATCAGAGT TTACACAACT CTTGCAGTTT CATATAGCTA CATATTTTGA TAACGAGTTG CCTGGACAGC CAAGGGCTAC TCAGAAATCA GGGAGGCCTA TTAAATCAAT ATGTAGTAGG CTGAAGGCCA AGGAAGGCAG AATCAGGGGT AACTTGATGG GAAAACGAGT TGATTTCTCG GCACGTACTG TTATTACACC AGATCCAACA ATAAATATTG ATGAACTTGG TGTTCCGTGG AGTATTGCCC TGAATCTCAC ATACCCAGAA ACAGTTACTC CCTATAACAT TGAAAGATTA AAAGAGCTCG TTGATTATGG ACCACATCCT CCACCTGGCA AGACTGGAGC GAAATATATC ATAAGGGACG ATGGCCAAAG ACTAGATCTT CGGTACCTTA AGAAGAGCAG TGATCAACAT TTGGAACTTG GATACAAAGT GGAGCGGCAT TTACAGGATG GTGATTTTGT TCTGTTTAAT CGTCAACCAA GTCTGCACAA AATGTCTATC ATGGGTCACA GGATTAGGAT TATGCCATAT TCCACTTTCC GTCTGAATTT GTCTGTCACG TCTCCGTACA ATGCTGATTT TGATGGGGAT GAGATGAACA TGCATGTACC ACAGTCATTC GAGACCAGAG CCGAGGTGTT AGAGCTGATG ATGGTTCCTA AATGTATTGT CTCCCCCCAG GCGAATCGGC CTGTGATGGG AATTGTGCAG GATACCCTCC TAGGGTGCCG TAAAATCACA AAGAGAGATA CCTTCATAGA GAAGGATGTA TTCATGAATA CACTAATGTG GTGGGAAGAC TTCGACGGGA AAGTTCCGGC TCCTGCAATT TTGAAGCCTC GTCCTCTTTG GACTGGCAAA CAAGTTTTTA ATCTTATCAT ACCAAAACAG ATAAATCTGT TGAGGTATTC TGCTTGGCAC GCAGATACAG AGACTGGATT CATAACTCCG GGGGATACTC AAGTGCGAAT TGAAAGAGGG GAACTTCTTG CCGGAACTCT TTGCAAAAAG ACCCTTGGTA CATCTAATGG AAGTCTCGTG CATGTCATTT GGGAAGAGGT TGGTCCTGAT GCAGCAAGGA AATTCCTCGG CCATACTCAA TGGCTTGTCA ATTACTGGCT TCTGCAGAAT GGTTTTACCA TCGGAATTGG TGACACAATT GCCGATTCAT CAACAATGGA GAAAATTAAT GAAACTATTT CCAATGCAAA AACTGCTGTG AAAGATCTTA TCCGGCAGTT CCAGGAAAAG AAGTTGGACC CTGAGCCTGG CCGAACTATG ACTGAGACAT TTGAGAACAG GGTTAACCAG GTTTTGAATA AAGCTCGTGA TGATGCTGGA AGTAGTGCTC AAAAGAGTTT AGCAGAAACC AATAACCTTA AGGCCATGGT GACAGCAGGA TCCAAAGGAA GTTTCATCAA TATTTCTCAA ATGACAGCGT GTGTCGGTCA GCAAAATGTT GAAGGGAAGC GAATTCCCTT TGGATTTGAT GGGCGGACAT TGCCACATTT CACCAAAGAT GATTATGGTC CTGAAAGTCG TGGTTTTGTT GAGAATTCGT ACCTGCGTGG GTTGACTCCT CAAGAGTTCT TTTTCCATGC CATGGGAGGA AGAGAAGGTC TTATTGATAC TGCTGTGAAG ACATCAGAAA CTGGATACAT TCAGAGGCGA TTGGTAAAGG CTATGGAGGA TATTATGGTT AAGTATGATG GGACAGTCAG AAACTCTTTG GGTGATGTTA TTCAGTTTCT CTATGGAGAA GATGGTATGG ATGCTGTATG GATAGAATCA CAGAAGCTGG ATTCCTTGAA AATGAAGAAA TCAGAGTTTG ATAGGACTTT TAAGTATGAG ATTGACGACG AAAACTGGAA TCCTACATAC CTAAGTGATG AACATCTCGA GGACTTGAAG GGGATTCGGG AGTTGCGTGA TGTATTTGAT GCAGAGTATT CGAAACTTGA GACTGACAGA TTCCAACTCG GGACAGAAAT TGCAACAAAT GGTGATAGCA CTTGGCCATT GCCTGTTAAC ATCAAGAGGC ATATCTGGAA TGCGCAGAAG ACTTTCAAAA TTGACTTGCG CAAAATTTCG GATATGCACC CTGTTGAAAT TGTTGATGCT GTTGATAAAC TACAGGAGAG GCTGCTGGTT GTTCCTGGTG ATGATGCGTT GAGTGTGGAA GCACAGAAAA ACGCAACATT GTTCTTTAAC ATTTTGCTTC GCAGCACTCT TGCTAGTAAA AGAGTTTTGG AAGAATACAA GCTTAGCCGC GAGGCTTTTG AGTGGGTCAT TGGTGAGATC GAATCGAGGT TTTTACAATC TTTAGTGGCC CCTGGGGAAA TGATCGGTTG TGTTGCTGCT CAATCAATTG GAGAACCTGC TACGCAGATG ACTCTGAACA CCTTCCATTA TGCTGGTGTT AGTGCAAAGA ACGTTACACT TGGAGTTCCC AGGTTGCGTG AAATTATTAA TGTAGCTAAG AGGATCAAAA CACCATCCCT ATCAGTCTAT CTCACTCCGG AAGCTAGCAA ATCAAAAGAG GGGGCCAAGA CTGTTCAGTG TGCTTTGGAG TATACTACTC TGAGGAGTGT CACTCAAGCT ACGGAAGTCT GGTATGACCC AGATCCAATG AGTACTATAA TTGAAGAGGA CTTTGAATTT GTGAGGTCCT ACTATGAGAT GCCAGATGAA GATGTTTCTC CAGATAAAAT ATCTCCTTGG CTACTTCGTA TAGAGTTGAA TCGTGAGATG ATGGTTGATA AGAAATTGAG TATGGCGGAT ATTGCGGAGA AGATCAACCT TGAGTTCGAT GATGACCTAA CTTGCATATT CAATGATGAT AATGCTCAAA AACTGATCCT TCGAATTCGC ATTATGAACG ATGAGGGCCC AAAGGGAGAG TTGCAAGATG AGTCGGCTGA GGATGATGTT TTCCTTAAAA AGATTGAGAG CAACATGCTG ACAGAAATGG CGCTCAGAGG TATTCCAGAC ATCAACAAGG TTTTTATTAA ACAGGTTAGG AAAAGCAGGT TTGATGAGGA GGGAGGTTTC AAGACATCTG AGGAGTGGAT GTTGGATACA GAAGGTGTTA ATCTCTTAGC TGTTATGTGC CACGAAGATG TGGATCCAAA GAGAACAACA AGCAATCACT TGATTGAAAT TATTGAAGTT CTCGGAATTG AGGCAGTTCG TCGTGCTTTG TTGGATGAAC TCCGTGTTGT GATATCCTTT GATGGTTCTT ATGTGAATTA CCGTCATCTT GCCATCTTGT GTGATACTAT GACCTATCGC GGTCATCTGA TGGCTATCAC TCGACATGGT ATCAATAGAA ATGACACTGG GCCTCTGATG AGATGCTCTT TTGAAGAAAC AGTTGATATT CTGCTAGATG CTGCGGCTTA TGCTGAGACA GACTGCTTAC GGGGTGTTAC TGAGAATATA ATGTTGGGTC AACTTGCACC AATTGGGACA GGAGATTGTG AATTGTATCT GAATGATGAG ATGCTGAAGA ATGCAATTGA ACTTCAGCTC CCTAGCTATA TGGATGGTCT GGAATTTGGA ATGACTCCTG CTCGTTCACC AGTGTCAGGC ACTCCTTACC ATGAAGGCAT GATGTCTCCG AACTACCTGT TAAGTCCAAA TATGCGTTTG TCGCCAATGT CAGATGCACA GTTTTCTCCA TATGTTGGTG GAATGGCCTT TTCGCCTTCT TCTTCTCCAG GCTATAGCCC ATCATCCCCT GGATACAGTC CTACTTCTCC CGGTTACAGT CCCACTTCAC CTGGATATAG CCCGACTTCT CCCGGTTATA GTCCAACTTC GCCTACCTAC AGTCCCAGTT CTCCTGGCTA TAGCCCAACA AGCCCTGCTT ATTCTCCTAC AAGTCCTTCC TATTCTCCTA CGTCTCCGAG CTATAGCCCT ACGTCTCCAA GCTATAGCCC TACGTCGCCA AGCTACAGCC CTACATCTCC AAGCTACAGT CCTACGTCCC CAAGTTACAG CCCGACTTCG CCTGCTTACA GCCCGACTTC ACCTGCATAT AGCCCGACTT CACCAGCATA CAGCCCAACC TCTCCTTCTT ACAGCCCAAC TTCACCATCT TACAGCCCAA CATCGCCTTC TTACAGCCCT ACTTCACCAT CATACAGTCC CACATCACCG TCTTACAGTC CTACTTCACC CGCATATAGC CCCACATCTC CTGGCTACAG CCCTACTTCA CCAAGTTACA GTCCAACATC ACCAAGCTAT GGTCCTACGT CTCCAAGCTA CAACCCTCAG TCTGCCAAAT ATAGCCCATC TATAGCTTAC TCTCCTAGTA ATGCGAGACT ATCACCAGCT AGCCCCTACA GTCCTACGTC TCCGAACTAC AGCCCGACAT CACCATCATA CTCACCCACA TCTCCATCTT ATTCACCTTC AAGTCCAACA TACAGTCCCA GCAGCCCGTA CAGCTCAGGA GCAAGCCCTG ACTACAGCCC AAGCGCAGGC TACTCGCCGA CACTTCCCGG TTATTCACCG TCATCTACGG GTCAGTATAC TCCACATGAG GGCGAGAAAA ATGCCAAGAC TGGAAAAGAT GTCAGTAAGG ATGGTAAAAG CAACCCTTGA AAGAGAGAGA GGAATATCTG TGTAACCCGC AGGGCATAAT TCAAGAGTCA GTGAAAGCTG AGAAAGGAAG GGACCGTTTC AAAGTGATCT TCTGTGGATA ACTTTGTGAC AGAGGCTTTC TTAGTAGATC CTTTTTTGTG AGTTGTGTAT TATTCTAAAC TGATCCATAA AGCCATCCAA TCCTCATCCC CCAAAAAGAA AATAGTATAA GCAAAGAAAA ACAAAAACAT CTCATAAACT TTGGGCTTTT CGTATGGTTT A |
| Length | 5781 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 2033854.. 2041108 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G35800.1 |
| Description | RNA polymerase II large subunit |
| TAIR curator summary | Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. |
| Alias | [NRPB1][RNA_POL_II_LS][RNA_POL_II_LSRNA_POL_II_LS][RPB1][RNA polymerase II large subunit][RNA POLYMERASE II LARGE SUBUNIT] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg893360 | Protein of unknown function (DUF1421) |
| 1.73205 |
Ahg475104 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein |
| 3.16228 |
Ahg951336 | cyclin dependent kinase group C2 |
| 3.4641 |
Ahg895977 | RNA polymerase II transcription mediators |
| 5.65685 |
Ahg471789 | XH/XS domain-containing protein |
| 6.63325 |
Ahg486045 | Protein kinase family protein |
| 6.9282 |
Ahg472806 | decapping 5 |
| 7.54983 |
Ahg938338 | Transducin/WD40 repeat-like superfamily protein |
| 8.24621 |
Ahg927518 | heat shock protein 91 |
| 8.3666 |
Ahg328081 | BEL1-like homeodomain 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|