| Annotation |
|---|
| Description | jgi|Araly1|476099|fgenesh2_kg.2__1229__AT1G69640.1 |
| Sequence |
AAAACGCAAG TATCGTTCTT TGTTTTGTTT CTTCTTCATC GTTGATTTGT CAAACTCAAC GACGCCAAAC CCTAAAACAA TCATCGATTC AACAATCAAA TTTCCCCTAT TGAAGGATAA AAATCAAACC TTTAGCAGTT TTCCTGTGAT AAAATCTTTC CTTTTTGCAT CAATTGCGTT TGGTTGATGA AGAGGATCTG AAGAAGCTGA GATTTAGGAA TGATGGGTTT TGCTGTATCG GATGAATTGT TGGGTACTGT TGCTCCGATT GTGGTGTATT GGTTGTATTC TGGGATTTAT GTAGCGCTCT CGTCTTTGGA GAGTTATAGA TTGCATTCAA AGGTTGAAGA AGAAGAGAAG AATCTTGTAT CGAAATCTTC TGTTGTGAAA GGTGTTCTTG TTCAACAGGT TGTTCAAGCT GTTGTCGCTA TCCTTTTATT CACGGTGACA GGAAGTGATG TCGAAGCAGA CAAAGCGCAA CAGTTTTCCC TGTTGGTCTT AGCCAGACAG TTTGTGACGG CCATGATAGT CCTAGACACA TGGCAATACT TTATGCATCG ATATATGCAT CACAACAAGT TCTTATACAA ACATATCCAC TCTCAACACC ACCGTCTTAT CGTCCCTTAT GCATATGGAG CGTTATACAA CCACCCAGTT GAAGGTCTTC TCTTGGATAC AGTTGGAGGC GCCTTATCTT TCCTAGTCTC TGGTATGTCT CCAAGAACTT CCATCTTCTT CTTCTCTTTC GCCACAATCA AGACTGTGGA CGACCATTGC GGTCTCTGGC TTCCTGGAAA CTTATTCCAT ATGGTCTTCA AGAACAACTC GGCTTACCAC GATATCCATC ATCAGCTCTA TGGAACCAAA TACAATTTCT CTCAGCCTTT CTTTGTTATG TGGGATCGGA TTCTGGGAAC TTACATGCCT TATTCCCTCG AGAAAAGAGA AGATGGAGGA TTCGAAGCAC GCCCGACTAA AGAATTCAAA GACGATTAAA GATTTTGGAG TTTGGATATA TGTTATGTAT CTGCCCTGGC CCCTGTGGTT GGATAATGGA TGATACTTTG TGTTATTGGA GGTGTAGTTT TAAATCAGAA ACAGAACTGG TTTGTGTTTT GCGTTTCTTC TCAAGAGCGA ATCTGGAGTT TGAGATTTGT ATATAAACAT TATTGAGTTG TTGTTCTACT TTCGGTTTTT TTGTTTTGCA TGTAACATTA CCACAACAAA CTTGTTTTTT T |
| Length | 1241 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 13054630.. 13056715 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G69640.1 |
| Description | sphingoid base hydroxylase 1 |
| TAIR curator summary | Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. |
| Alias | [SBH1][sphingoid base hydroxylase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.74456 |
Ahg496212 | PDI-like 1-4 |
| 10.9087 |
Ahg945524 | detoxifying efflux carrier 35 |
| 11.4018 |
Ahg347136 | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein |
| 12.2474 |
Ahg476734 | |
| 12.3288 |
Ahg479304 | Transducin/WD40 repeat-like superfamily protein |
| 13.4164 |
Ahg484709 | exocyst subunit exo70 family protein E1 |
| 13.5647 |
Ahg483978 | B-box type zinc finger protein with CCT domain |
| 15.2971 |
Ahg478100 | emp24/gp25L/p24 family/GOLD family protein |
| 15.8745 |
Ahg471435 | proline-rich family protein |
| 19.2614 |
Ahg946262 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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