| Annotation |
|---|
| Description | jgi|Araly1|477021|fgenesh2_kg.2__2151__AT1G78570.1 |
| Sequence |
GTCTTTTGTG TTCGTTCTCA TCTTTTTTTT GAATTTTGAT TCTTCTTCTC CGCTTCTTTC GCTTCTTCCT CAGCTTCTTC ACCGTCAAAA GTTCTTCACA TTTTCTCGGA ATTTTCCAGT TATCTTCCCA AAATTCTCTT GCTAACGTTG AAGATCTGAA AAATTCAAAG CGTTTAATCA TGGCTTCGTA CACTCCCAAG AACATTCTCA TCACCGGAGC TGCTGGTTTC ATTGCTTCAC ATGTAGCCAA CAGACTCATA CGAAGCTATC CTGATTACAA CATCGTTGTG CTTGACAAAC TTGATTACTG TTCAAATCTC AAGAATCTCA ATCCTTCTAA ACAGTCTCCG AATTTCAAGT TTGTCAAAGG TGATATCGCT AGTGCTGACT TGGTGAATCA TCTTCTCATC ACTGAAGGTA TCGACACCAT CATGCATTTC GCTGCTCAGA CTCACGTCGA CAATTCCTTC GGTAACAGTT TCGAGTTTAC TAAGAATAAT ATCTATGGAA CTCATGTGCT TCTTGAGGCT TGTAAAGTTA CTGGTCAGAT TAGGAGGTTT ATTCATGTCA GTACTGATGA GGTTTATGGT GAAACTGATG AGGATGCTCT TGTTGGTAAC CATGAGGCTT CTCAGCTACT TCCGACGAAT CCTTACTCTG CCACGAAAGC TGGTGCGGAG ATGCTTGTTA TGGCTTATGG TAGGTCTTAT GGGTTGCCTG TTATTACCAC ACGTGGGAAC AACGTCTATG GACCGAATCA GTTTCCTGAG AAGTTAATTC CTAAGTTCAT TTTGCTGGCA ATGAGAGGGC AAGTTCTTCC CATTCATGGA GATGGGTCAA ATGTCAGGAG CTACCTGTAC TGTGAAGATG TTGCTGAGGC TTTTGAAGTT ATTCTGCACA AGGGAGAAGT TGGCCATGTT TACAATATTG GGACGAAGAA GGAGAGGAGA GTCAATGATG TTGCCAGAGA TATCTGCAAA CTCTTCAGCA TGGACCCTGA GGCGAACATC AAGTTTGTCG AGAACAGACC TTTTAACGAT CAAAGGTACT TTCTTGACGA TCAGAAGCTC AAAAAGTTGG GATGGTCAGA GAGGACCACT TGGGAAGAAG GGTTGAAGAA AACTATGGAA TGGTACACAC AGAACCCGGA GTGGTGGGGT GATGTTTCTG GAGCATTGCT TCCTCATCCA AGGATGTTGA TGATGCCTGG CGGGCGACAC TTTGATGGCT CGGAGGACAA TTCTCTGGCA GCTACTTTAT CAGAGAAACC AAGTCAAACC CATATGGTTG TTCCAAGCCC AAGGAGCAAC GGCACACCGC AAAAGCCTTC GCTGAAGTTC TTGATATATG GAAAGACCGG ATGGATTGGT GGTCTGCTTG GAAAGATATG TGAGAAGCAA GGAATTGCTT ACGAGTATGG GAAAGGTCGG TTGGAGGATC GATCATCTCT TCTGCAGGAT ATTCAGAGCG TTAAGCCAAC CCATGTTTTC AATTCCGCTG GTGTGACCGG GAGACCCAAT GTTGACTGGT GTGAGTCTCA CAAGACCGAG ACTATCCGTG CCAATGTAGC TGGCACATTG ACTCTAGCTG ATGTCTGCAG AGAGCATGGA CTCCTGATGA TGAATTTCGC TACTGGTTGT ATATTCGAAT ATGACGACAA GCATCCAGAA GGTTCAGGAA TTGGCTTCAA GGAGGAAGAC ACCCCCAACT TCACTGGCTC TTTTTACTCA AAAACCAAAG CCATGGTTGA GGAGCTGCTA AAAGAGTATG ACAACGTATG CACATTGAGG GTAAGGATGC CGATCTCCTC GGATCTAAAC AACCCGCGCA ACTTTATCAC CAAGATCTCC AGGTACAACA AAGTAGTGAA CATCCCAAAC AGCATGACTG TGTTGGACGA GCTTTTACCA ATCTCCATCG AGATGGCGAA AAGAAACTTG AAAGGAATCT GGAACTTCAC AAACCCAGGT GTGGTGAGCC ACAACGAGAT CCTAGAGATG TACAGAGACT ACATCAACCC TGAATTCAAA TGGGCGAACT TCACATTAGA GGAGCAAGCT AAAGTCATTG TGGCACCAAG AAGCAACAAC GAGATGGATG CTTCCAAGCT CAAGAAAGAG TTCCCTGAGC TACTCTCTAT TAAGGAGTCT CTGATTAAGT ATGCATTCGA GCCAAACAAG AAAACCTGAA GAGAGAAAGA TTGTGATTCG TCATTAGATT AATCATCTTT AATATCAGTT TCGTTTATTT GTTTTGTTAT TTGTTTAATT ACCCCTTGTT TCATTAGATT TGCTTAGGGG TGTATTTGTA GTTCGAATAT TATATGTAAT AAGAGCTTGT TCACAATTTT GTCATAAGTT GCTCTACTCT TATTTTATAA GAATCAAACC ACTAAAAGAG TCTGGTAATG GCTGCTTTTT GTT |
| Length | 2423 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 17239136.. 17242142 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G78570.1 |
| Description | rhamnose biosynthesis 1 |
| TAIR curator summary | Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. |
| Alias | [ATRHM1][RHM1][ROL1][ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1][rhamnose biosynthesis 1][REPRESSOR OF LRX1 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg917976 | Embryo-specific protein 3, (ATS3) |
| 2.44949 |
Ahg938226 | phenylalanine ammonia-lyase 2 |
| 2.82843 |
Ahg919306 | UDP-Glycosyltransferase superfamily protein |
| 3.4641 |
Ahg488566 | UDP-glucosyl transferase 78D3 |
| 3.74166 |
Ahg934322 | methionine adenosyltransferase 3 |
| 5.47723 |
Ahg472481 | Class-II DAHP synthetase family protein |
| 5.91608 |
Ahg493342 | UDP-Glycosyltransferase superfamily protein |
| 6.245 |
Ahg919631 | copper/zinc superoxide dismutase 1 |
| 6.32456 |
Ahg910343 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| 6.63325 |
Ahg313693 | UDP-glucosyl transferase 78D1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|