| Annotation |
|---|
| Description | jgi|Araly1|477758|fgenesh2_kg.3__459__AT3G04870.2 |
| Sequence |
ATGAGGAGAG AAAGCATCAT ACATCATCAC AAACAAATTT CTTCATCGCT CATTAGCGAT TGCTCTTATC TCAGTTGATT GGCCATGGCT TCTTCAATCG TCTTCGCCGC AACTCCGGCT ACTGGGTTTC TCTCCGTTCC TCCTTTGAAG TCTCGGAGAT TTTATGTTAA TTCTTCACTC GACTCCGATG TTTCCGACAT GAGTGTTAAC GCTCCAAAGG GGTTATTTCC TCCAGAGCCT GTACCATACA AGGGACCTAA GCTGAAAGTA GCTATCATAG GAGCTGGACT TGCAGGCATG TCAACTGCTG TAGAGCTTCT CGATCAGGGT CACGAGGTGG ATATATATGA TTCTAGGACA TTCATTGGTG GCAAAGTGGG TTCTTTTGTA GATAGACGTG GGAACCATAT TGAAATGGGA TTACATGTAT TCTTCGGATG CTACAACAAT CTCTTCCGCT TGATGAAGAA GGTGGGTGCT GATAAAAACC TTCTTGTCAA AGACCATACT CATACATTTA TAAACAAAGA CGGGACAGTT GGAGAGCTTG ATTTTCGGTT TCCTGTTGGA GCTCCAATTC ATGGCATTCG CGCATTTTTG GTCACAAATC AACTCAAGCC CTATGATAAA CTAAGGAATT CACTGGCTCT TGCATTAAGC CCAGTTGTTA AAGCTCTCGT CGACCCCGAT GGAGCAATGA GAGACATTCG CAATCTTGAC AGCATAAGTT TCTCGGATTG GTTCCTGTCG AAAGGTGGGA CACGGGCAAG TATCCAGAGA ATGTGGGATC CTGTTGCTTA TGCACTCGGT TTCATAGACT GCGATAACAT GAGTGCGCGA TGTATGCTTA CCATATTCTC ATTATTCGCC ACCAAAACAG AAGCTTCTTT GTTGCGTATG CTAAAGGGCT CGCCTGATGT TTACTTGAGT GGTCCTATCA AACAATATAT CACAGATAGA GGTGGCAGAA TCCATCTAAG GTGGGGTTGT AGGGAGATAC TTTATGATAA ATCAGCAGAT GGAGAAACCT ATGTCACTGG ACTAGCAATT TCTAAGGCTA CGAACAAGAA GATTGTGAAA GCTGATGTGT ATGTTGCAGC ATGTGATGTG CCGGGAATCA AAAGATTACT TCCAAAAGAA TGGAGGGAAT CTCGGTTTTT CAACGATATA TATGAACTCG AGGGAGTACC TGTTGTTACA GTACAGCTCA GATACAATGG TTGGGTCACG GAGTTACAAG ACATTGAACT TTCCAGGCAG TTGAAACGAG CGGTTGGCTT AGATAACCTT CTTTACACTC CTGATGCTGA TTTCTCGTGC TTTGCGGATC TTGCACTCGC TTCGCCTGCA GATTATTACA TCGAAGGACA AGGCACTTTA CTTCAGTGCG TTCTAACACC GGGAGATCCA TACATGCGAA TGCCGAACGA TAAGATCATA GAGAAAGTAG CGATGCAGGT CACTGAGTTG TTTCCATCGT CACGGAGCCT AGAAGTCACT TGGTCATCGG TTGTAAAAAT CGCTCAGTCT CTGTACCGTG AAGCACCCGG AAAAGATCCA TTCAGACCCG ATCAGAAGAC GCCCATAAAG AATTTCTTCC TCGCTGGTTC ATACACAAAG CAGGATTACA TAGATAGTAT GGAAGGAGCG ACATTATCAG GGAGACAAGC TTCGTCATAC ATCTGTGATG CCGGTGAAGA ACTAGCAGAG CTAAACAAGA AGCTTTCTTC TTCTGCAACT GCAGTTCCTG ATGAGCTAAG TCTGGTCTAA TGATGGGAAA ATGTTTGAAA GTAGTTCCCA ATGGCTAATT GATGAAGATT TGAGACACTA TGGGTACATG AAGAAGAAAC ATATGTAGAA AAACCCTTTA TATAGTGTTC ATAAGAGAAA GCATTTGTAT TATGACACAA TCTTTTGAAA TCAAACATTC TTACAAAGTA CATCAATTCC AGAAAGTTTA TTCTC |
| Length | 1965 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 1658348.. 1662730 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G04870.1 |
| Description | zeta-carotene desaturase |
| TAIR curator summary | Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene. |
| Alias | [PDE181][SPC1][ZDS][PIGMENT DEFECTIVE EMBRYO 181][SPONTANEOUS CELL DEATH 1][zeta-carotene desaturase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg326110 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases |
| 4.69042 |
Ahg473366 | cytochrome P450, family 97, subfamily A, polypeptide 3 |
| 5.74456 |
Ahg491070 | NAD(P)H dehydrogenase (quinone)s |
| 18.6548 |
Ahg944415 | Pentatricopeptide repeat (PPR) superfamily protein |
| 19.6723 |
Ahg484042 | ribose-5-phosphate isomerase 2 |
| 25 |
Ahg319286 | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative |
| 25.593 |
Ahg494966 | tRNA synthetase class I (I, L, M and V) family protein |
| 26.4953 |
Ahg476802 | Photosystem II reaction center PsbP family protein |
| 26.7208 |
Ahg494007 | Trypsin family protein with PDZ domain |
| 27.3313 |
Ahg471925 | Translation initiation factor 2, small GTP-binding protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|