| Annotation |
|---|
| Description | jgi|Araly1|477791|fgenesh2_kg.3__492__AT3G05090.2 |
| Sequence |
CTGATTTTAC CAAGTCTCGA GCCTTTGAGA GAAGAGAGTT TTGTGGTTTC CTTGAAGGAA AAAAAAAAAA CACTTTTTTT TTGGTTTCTT CTTCATCTTC TTCCAATTCT CCAAACGCCA TCACGCCTTT GGAAAAAAGG CTGCTCTTTG TTTGTCCGTC TTGACTCTTC AATTAATAAT TTTTCCAAAT TTGTGCTAAC TTTCGACTTT CTAGATCAAT CCGATTCCCA AATCTCGTTA TTCACTCCCG CGCCCAACGA TCGATTCTAG GGTTTCTCTG TGTGTGTTTT GGGTTGCTGA ATCACGTTGT TACTATCATC GATTTCATCT CAAGTTCAGA TTTTTAAAGC CTTTCAGGAT ACTTTGAAAT GCACCGGGTT GGAAGTGCCG GCAGTAATGG CGGTTCTGTT CGCACTCGCA AAGAGAAAAA GCTTACCTAT GTATTAAATG ATGCCAACGA CACAAAGCAT TGTGCTGGCA TAAATTGCTT GGATGTGTTG AAGTCGTCTA TTTCTAATGA TCAAAGCTAC CTCTTCACTG GAAGTCGTGA TGGTACACTC AAGAGATGGG CATTTGACGA GGATGCAACC TTTTGCTCAG CTACGTTTGA GTCTCATGTT GACTGGGTGA ACGACGCTGC TCTGGCTGGT GAAAGCACTC TTGTTTCTTG TTCTTCAGAC ACTACGGTCA AGACATGGGA CAGTTTATCA GATGGAGTCT GTACGAGGAC CCTCCGTCAG CATTCTGACT ATGTTACTTG TTTGGCAGTT GCTGCAAAAA ATAGTAATCT TGTTGCATCT GGTGGCCTTG GTGGGGAGGT TTTTATATGG GATATCGAAG CTGCTTTGTC ACCAGTTACA AAACCTAATG ATGCTAATGA AGATAGTTCT TCTTCAAATG GTGCAAATGT ACCTGTTACA AGTTTAAGAA CTGTTGGTTC GAGCAACAAT ATTTCTGTGC AGTCATCTCC ATCTCATGGG TACACACCAA CAATTGCCAA AGGCCATAAG GAGTCTGTGT ATGCTTTGGC GATGAATGAT ACCGGAACGA TGCTCGTCTC TGGTGGAACA GAGAAGGTTT TACGTGTCTG GGACCCTAGA ACCGGTTCAA AGAGTATGAA GCTGAGGGGG CATACAGATA ATGTCAGAGT GCTGCTTCTG GACTCAACTG GCAGGTTTTG CTTGTCTGGG TCCTCTGATT CTATGATAAG ACTATGGGAT CTAGGTCAGC AGCGTTGTCT TCATACCTAT GCGGTGCATA CAGATTCTGT TTGGGCGCTT GCATGCACTC CATCATTTAG TCATGTTTAT AGCGGTGGAA GAGACCAATG TTTATACTTG ACAGACTTGG CAACAAGGGA GAGTGTTTTG CTGTGCACTA AGGAACATCC AATTCAGCAA TTAGCGTTGC AAGATAATAG TATATGGGTT GCAACTACAG ACTCCTCTGT AGAGAAATGG CCTGCCGAAG TACAGAGTCC TCAAAAGGTC TTTCAACGAG GTGGCTCTTT CTTGGCTGGG AATTTGTCTT TTAATAGGGC GAGGGTGTCT TTGGAAGGGC TAAATCCACC CCCTGCCTAC AAGGAGCCGT CAATAACTGT TCCAGGAACT CACCCGATTG TGCAACATGA GATTTTGAAT AATAAAAGGC AAATTTTAAC CAAGGACGCA GCTGGCTCAG TGAAACTATG GGATATGACT AGGGGTGTTG TGGTAGAGGA CTATGGAAAG ATTTCATTTG AAGAGAAGAA AGAAGAACTG TTTGAGATGG TAAGCATTCC ATCATGGTTT ACTGTGGATA CACGACTTGG ATGCTTATCT GTACATTTGG AGACTCCACA ATGCTTCTCT GCTGAGATGT ATTCAGCAGA CCTCAAAGTT TCTGGGCGAC CTGAAGATGA TAAGATTAAT CTAGCTCGTG AAACACTGAA AGGTCTGCTG GGTCACTGGC TGGCAAAAAA GAAGCACAAA CCCAAACCCC AAGTTCTTAC CTCTGGAGAT ACTTTATCTG TAAAAGATAC CAAAAAAAAT CTAAGTGCAT CAAAAGCTGA AGACAGTAGT GCTGCATGTG ATCCGGTGTA TCCTCCATTC GAGTTTTCTT CCGTCTCCCC TCCTTCCATC ATAACCGAGG GTTCTCAAGG AGGACCATGG AGGAAGAAGA TAACCGAGTA TACTGGAACT GAAGATGAGA AGGACTTCCC ATTGTGGTGC TTGGATGCTG TCTTGAACAA TCGTCTTCCA CCTAGAGAAA ATACAAAATT AAGCTTCTTC CTGCATCCAT GTGAAGGTTC ATCTGTGCAG GTGGTTACAC TAGGGAAACT TAGTGCACCC CGGATCTTAA GAGTTCACAA GGTTACCAAT TACGTTGTGG AAAAGATGGT CCTTGACAAT CCGTTGGACA GTCTAGCTCT TGATGGAACA AGTGTTTCAG GAGGACAACC TCAGCCACTG TTTGCAGGAA ATGGATTGTT ACAGTCTGGA TTAAAGCCTT GGCAGAAACT TAGACCTTCC ATTGAGATCT TATGTAATAA CCAGGCAAAG AATTCGTTTC ACGGATCTCA ATTAACTGTC TTGTCTCCAG ATATGAGTTT AGCAACTGTA CGGGCATATA TATGGAAGAA ACCTGAGGAT CTAATTCTCA ACTACAGAGT GGCTATAGCT AGATAACTTT TGAGATTGGG ATCTGTCTGC TGGTGCATTT AATCACATGG AAGTCTATAG CTTTTCATTG ATTTTCCTTT CAAAAAGCAT AGATCTTGGT TTACCTTGGC CTAGTGTTTT ACTCAGCTTC TGTTCATTGG AGCTTGAAGT CATGAGAAGT GGGCACCAAT AAAGGTCCAA GATTTTAGGT GAGATGGTGT CGAAAACTTT ACTGAATTTG TACATTAGGT TTGAGCTTTG CAAAACAAAA AAAATACTTA GTATCTATTT TTGATTGTTC CCTAATAAAT AAACCAATGT TGTATCTAAA CTCCTACATC CACTGTGGAA GCAACATGCC GAGAAGAAAG TTCTTAGGAG CTCTGTGTT |
| Length | 3029 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 1769197.. 1774963 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G05090.1 |
| Description | Transducin/WD40 repeat-like superfamily protein |
| TAIR curator summary | Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1ÂCul4–mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence. |
| Alias | [LRS1][LATERAL ROOT STIMULATOR 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg492484 | AMP-dependent synthetase and ligase family protein |
| 4.89898 |
Ahg481296 | DNA repair ATPase-related |
| 5.19615 |
Ahg475645 | splicing factor-related |
| 5.65685 |
Ahg942061 | RNA recognition motif (RRM)-containing protein |
| 6.7082 |
Ahg490301 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 7.54983 |
Ahg918979 | splicing factor Prp18 family protein |
| 7.74597 |
Ahg481753 | AAA-type ATPase family protein |
| 8.77496 |
Ahg496018 | Protein kinase superfamily protein |
| 10.9545 |
Ahg489168 | Zinc finger, C3HC4 type (RING finger) family protein |
| 11.7473 |
Ahg315410 | binding |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|