| Annotation |
|---|
| Description | jgi|Araly1|481753|fgenesh2_kg.4__813__AT2G27600.1 |
| Sequence |
ATCGCTTTGC ATAATCCATT CCTTCTTCTC CATCCCCTTC CTCTCTCTCC TTCCTCCGAT CTTCTTCTTC AATTTGGAAT CTTCTCATCA CGATTTCAAA CCTCCATCGA TCCTTGATCA TCACCGATTC AATCAATTTG GAATCACAAT TTCAAATCGA GAGAATTTCA ATTTCTCTGG TAAAACCCTA AAATTATGTA CAGCAATTTC AAGGAACAAG CGATCGAGTA CGTGAAGCAA GCGGTTCATG AAGACAATGC TGGGAATTAC AATAAAGCTT TCCCTCTATA CATGAACGCG CTTGAGTACT TCAAAACTCA TCTCAAGTAT GAGAAGAACC CTAAGATCAG AGAAGCTATT ACCCAGAAAT TCACCGAGTA TCTTCGTCGT GCTGAGGAGA TCCGTGCTGT TCTCGATGAA GGTGGATCGG GTCCAGGATC TAACGGTGAC GCTGCGGTTG CAACGAGGCC AAAGACTAAG CCCAAAGATG GAGAAGGTGG TGGTAAAGAT GGAGAAGATC CTGAGCAATC GAAGCTTCGA GCTGGGTTAA ACTCTGCTAT TGTTAGGGAG AAACCTAATA TCAAGTGGTC TGATGTTGCT GGGCTTGAAA GTGCTAAACA AGCTTTGCAG GAAGCTGTGA TTTTGCCTGT TAAGTTTCCA CAGTTCTTCA CAGGAAAGAG ACGGCCATGG AGAGCTTTTC TGTTGTATGG GCCTCCTGGA ACAGGAAAAT CTTATTTGGC TAAGGCTGTT GCTACTGAAG CAGACTCTAC CTTTTTCAGC GTGTCTTCAT CAGACCTTGT CTCGAAGTGG ATGGGTGAAA GTGAGAAGCT AGTATCAAAC CTTTTCGAGA TGGCCCGTGA AAGTGCTCCA TCGATTATTT TTGTTGATGA GATAGATTCT TTGTGCGGTA CACGTGGAGA AGGAAACGAG AGTGAAGCTT CAAGACGTAT CAAAACAGAG CTTCTAGTGC AGATGCAGGG TGTTGGACAC AATGATGAGA AAGTACTTGT ACTTGCAGCA ACCAATACAC CCTATGCTCT TGATCAGGCT ATCCGACGAC GTTTTGACAA GCGTATCTAT ATTCCTCTCC CAGAGGCCAA GGCTCGTCAG CACATGTTCA AAGTCCATTT GGGAGATACA CCTCATAATT TAACTGAACC TGATTTTGAA TATTTAGGCC AAAAGACAGA AGGGTTTTCT GGTTCAGATG TGTCTGTTTG TGTAAAAGAT GTTCTGTTTG AACCTGTTCG TAAAACACAA GATGCAATGT TCTTTTTCAA GTCTCCTGAT GGTACATGGA TGCCATGTGG GCCTAGGCAC CCTGGTGCCA TCCAGACTAC AATGCAAGAT CTAGCAGCAA AAGGGCTTGG CGAAAAGATT ATTCCACCAC CAATCACCAG AACCGATTTC GAAAAGGTAC TTGCTAGACA AAGGCCAACA GTGAGCAAGT CTGACCTTGA TGTCCACGAG AGATTCACAC AGGAGTTTGG AGAAGAAGGT TGATAGATTT GACATTCCAT CAAGCATCTT TCACAATCAT ATTATTATTA GTCTCTTCAC TTTCTCCTTA TGTATGTACT GAGAAGCAAA ACAAAATCTC AAACCCATGT TTGATTCCAT CCCAAAAACA TTGAATTTGC TTTATTTCTC GAAATGTGTA AAAAAATGTT CTGAACAATG TTTTCTAATC ACCAAAAGTC TCCACATGAG CAAACTCCAT CACTGCTAAA GTGATGAAAC CGATTTGAAT CTCT |
| Length | 1754 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 11954350.. 11957350 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G27600.1 |
| Description | AAA-type ATPase family protein |
| TAIR curator summary | Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. |
| Alias | [ATSKD1][SKD1][VPS4][SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1][VACUOLAR PROTEIN SORTING 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg471702 | Endosomal targeting BRO1-like domain-containing protein |
| 3.74166 |
Ahg481921 | ubiquitin-activating enzyme 1 |
| 5.38516 |
Ahg478309 | cell division cycle 48 |
| 6 |
Ahg490777 | ubiquitin-specific protease 3 |
| 6.16441 |
Ahg472363 | wall-associated kinase 2 |
| 6.32456 |
Ahg478644 | SNF2 domain-containing protein / helicase domain-containing protein |
| 6.32456 |
Ahg471816 | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| 6.48074 |
Ahg478986 | Regulator of chromosome condensation (RCC1) family protein |
| 7.74597 |
Ahg477791 | Transducin/WD40 repeat-like superfamily protein |
| 10.9545 |
Ahg476207 | Protein of unknown function DUF2359, transmembrane |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|