Detail


ID : Ahg477943

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|477943|fgenesh2_kg.3__644__AT3G06400.1
Sequence
TTTTTATTTT ACTTTTCCAC AAGCGAAGCG AACCCTCGAT CTCAAGGCGA AAGCAGATTT CGTAGCTTCC ATGGCGAGAA ATTCGAATTC CGATGAGGCA TTCTCGTCAG AGGAGGAAGA AGAGCGGGTT AAGGATAATG AAGAAGAAGA TGAGGAGGAG CTCGAGGCTG TTGCTCGTTC TTCTGGCTCC GACGATGACG AAGTAGTCGC CGCCGACGAA TCCCCAGTCT CCGACGGAGA GGCTGCTCCC GTAGAAGATG ATTACGAGGA CGAAGAAGAT GAGGAAAAAG CTGAAATCAG CAAACGTGAG AAAGCCAGAC TTAGAGAGAT GCAGAAATTG AAGAAGCAGA AGATTCAAGA GATGCTGGAC TCACAAAATG CTTCCATAGA TGCGGATATG AACAATAAGG GAAAAGGGAG ACTGAAGTAT CTTCTGCAGC AAACTGAGTT ATTTGCACAC TTTGCAAAAG GTGATGCATC TTCTTCTCAG AAGAAGGCTA AAGGAAGGGG TCGTCATGCT TCCAAAATAA CTGAAGAGGA GGAAGACGAA GAGTATCTAA AGGAAGAAGA GGATGGCTTA ACTGGATCTG GAAACACACG GTTACTCACA CAGCCCTCTT GTATTCAAGG GAAGATGAGA GATTACCAAT TAGCTGGTTT AAACTGGCTC ATTCGGCTGT ATGAGAATGG CATAAATGGA ATTCTTGCTG ATGAAATGGG TCTGGGGAAG ACGCTTCAAA CGATTTCTTT GTTGGCATAC CTTCATGAAT ACAGGGGAAT CAATGGTCCC CATATGGTGG TTGCTCCAAA ATCAACACTT GGTAATTGGA TGAACGAAAT TCGCCGGTTT TGTCCTGTCC TACGTGCTGT GAAGTTCCTT GGTAATCCTG AGGAGAGGAG ACATATTCGA GACGACCTGC TAGTTGCTGG GAAATTTGAT ATTTGCGTCA CAAGCTTTGA GATGGCCATC AAAGAGAAGA CAGCACTTCG TCGGTTTAGC TGGCGTTATA TTATCATCGA TGAAGCGCAT AGAATCAAGA ACGAGAATTC TCTCCTTTCT AAAACCATGA GACTTTTTAG CACCAATTAT CGGCTTCTTA TCACGGGAAC CCCCCTTCAG AATAATCTTC ATGAACTGTG GGCTCTTCTA AATTTTCTTC TGCCTGAGAT TTTTAGTTCA GCAGAGACTT TTGATGAATG GTTTCAAATT TCTGGTGAGA ATGACCAGCA AGAAGTTGTT CAACAACTTC ACAAGGTTCT TCGACCATTT CTTCTTCGAA GACTAAAGTC AGATGTTGAG AAAGGTTTGC CACCGAAGAA GGAGACCATA CTTAAAGTTG GTATGTCTCA GATGCAAAAG CAATACTACA AGGCTTTACT GCAGAAGGAT CTTGAAGCGG TTAATGCTGG TGGAGAACGC AAACGTCTGC TAAACATTGC AATGCAACTG CGTAAATGCT GCAATCACCC TTATCTCTTC CAGGGTGCAG AACCTGGTCC CCCATATACC ACAGGAGATC ACCTTATAAC AAATGCTGGT AAGATGGTTC TGTTGGATAA ATTGCTTCCT AAGTTGAAAG AACGTGATTC AAGGGTTCTG ATATTTTCTC AGATGACAAG ACTTTTGGAT ATTCTTGAGG ACTATTTAAT GTATCGTGGT TACCTGTATT GCCGCATTGA TGGAAACACT GGTGGTGACG AACGAGATGC CTCCATAGAA GCCTACAACA AGCCAGGAAG TGAGAAATTT GTTTTCTTGT TATCTACCAG AGCTGGAGGG CTTGGTATCA ATCTTGCTAC TGCAGATGTT GTTATCCTGT ACGATAGTGA TTGGAACCCA CAAGTCGACT TGCAAGCTCA GGATCGTGCC CATAGAATTG GTCAAAAAAA AGAAGTTCAA GTGTTTCGAT TCTGCACTGA GTCTGCTATT GAGGAGAAAG TGATTGAAAG AGCTTACAAG AAGTTAGCAC TTGATGCTCT GGTTATTCAG CAAGGGAGAT TGGCAGAGCA GAAAACTGTC AATAAGGATG AGTTGCTTCA AATGGTAAGA TATGGTGCTG AGATGGTGTT CAGTTCTAAA GATAGCACAA TCACAGACGA GGATATTGAT AGAATCATTG CCAAAGGAGA AGAGGCAACA GCTGAACTTG ATGCCAAGAT GAAGAAATTC ACAGAAGATG CGATACAGTT TAAAATGGAT GACAGTGCTG ACTTCTATGA TTTTGATGAT GACAATAAGG ATGAAAACAA GCTCGATTTT AAAAAGATTG TAAGCGACAA TTGGAATGAT CCCCCCAAAC GGGAGAGAAA GCGCAACTAC TCTGAATCTG AATACTTTAA GCAAACATTG CGGCAAGGTG CTCCAGCTAA ACCTAAAGAG CCTAGAATTC CGCGCATGCC CCAGTTGCAC GATTTCCAGT TCTTTAACAT TCAGAGATTG ACCGAGTTGT ATGAAAAGGA AGTACGTTAT CTCATGCAAA CACATCAGAA AAATCAGTTG AAAGACACTA TTGATGTTGA AGAACCAGAA GGTGGAGATC CCTTAACTGC TGAAGAAGTA GAAGAAAAGG AGCGATTATT GGAGGAGGGT TTCTCAACAT GGAGCAGAAG AGATTTCAAT ACTTTCCTCA GGGCATGTGA GAAGTATGGC CGCAACGACA TAAAAAGCAT TGCCTCTGAG ATGGAAGGGA AAACAGAGGA AGAAGTTGAA AGATATGCCA AAGTATTCAA AGAGCGATAC AAGGAGCTGA ACGACTATGA TAGAATAATT AAGAACATTG AGAGGGGAGA GGCAAGGATC TCTAGGAAAG ACGAAATCAT GAAAGCCATA GGGAAGAAGC TGGATCGTTA CAGAAACCCT TGGCTGGAAC TGAAGATTCA GTATGGTCAG AACAAAGGAA AGTTGTACAA TGAAGAGTGC GACCGTTTCA TGATCTGCAT GATCCACAAA CTTGGGTATG GGAATTGGGA TGAGCTGAAG GCAGCATTCA GGACATCGCC TTTGTTCAGG TTCGACTGGT TTGTGAAATC TCGCACGAGT CAGGAACTTG CAAGAAGATG CGACACCCTG ATTCGACTGA TAGAGAAAGA GAACCAGGAG TTTGATGAAA GAGAGAGGCA AGCCCGTAAA GAGAAGAAGC TGGCAAAGAG TGCAACACCA TCAAAACGAC CTTTAGGAAG ACAAGCCAGT GAGAGTCCTT CATCGACGAA GAAGCGAAAG CACCTGTCGA TGAGATGAGA TTATGTGTTT ACGGATTTGT TGAGTCTTTG TTGTTACATA TAGTTAAGCT AATGTCAAAA ACATAGCAAA TGGATTTCAT TCTGCTTTCG TGAATGTTTG TCGGCTGGTT TGACTTGGAT TTAATGAAAT GACTTAATTA TAATTTTAAA GAAACTGAAC AAAAAGATCT GAGGCCATTG GATGGCAACT TAGGCCGATG CTTAAGC
Length3447
Protein Sequence
Protein Residue
Map Locationscaffold_3: 2444563.. 2450433
Download Sequence
A.thaliana
AGI-codeAT3G06400.3
Descriptionchromatin-remodeling protein 11
TAIR curator summaryEncodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.
Alias[CHR11][chromatin-remodeling protein 11]
Gene coexpression
MR
MR Locus Description
3.16228 Ahg916985
3.4641 Ahg471977 tetratricopeptide repeat (TPR)-containing protein
6.16441 Ahg347608 SIT4 phosphatase-associated family protein
6.245 Ahg489503 shaggy-related kinase 11
8 Ahg471712 protein-protein interaction regulator family protein
10.583 Ahg494201 binding
10.8167 Ahg486795 CW-type Zinc Finger
13.8564 Ahg948886 TBP-associated factor 4
15 Ahg481481 Transmembrane proteins 14C
15.9374 Ahg483987
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression