| Annotation |
|---|
| Description | jgi|Araly1|478590|fgenesh2_kg.3__1291__AT3G12280.1 |
| Sequence |
TTTTTAGGGT TTGCCGCATA ATCGGACCCC ATTCTAGAGA GAAGTCAGGT GAAGATAGAG AGAGACACTT AGAGGAGGGA AATTTGTAGG GTTTGCGGAG ATCTCTGTGA TTCTTCTGAA TTTGTCGAAT TTTTTGGAGG AGGCGTTAGA AGTCGGACTT GTTAAAAATT TAGATCTTCT GCTCAGCTTT AATCGGTGAC GTTTGGTTTT GGGATCTGTG ACACAAAAAG CTGCGTTGGA GACTATGGAA GAAGTTCAGC CTCCAGTGAC CCCGCCCATT GACCCTAATG GGAAAAGAAG CGAAGCGTCT CTCTTAGACA TATGCGAGAA AGTTCTGTCT CTTGATGGGA GCACTTGCGA TGAAGCTTTG AAGTTGTTTA CAGAAACCAA ACGAATTTTG TCAGCAAGCA TGTCTAACAT TGGAAGTGGA ACGCGGGAGG AAGTAGAGAG GTTCTGGTTT GCGTTTATTC TCTATTCAGT GAAGAGGCTT AGTGTGAGAA AAGAAGCGGA TGGTCAGTCA GTGTCTGGTG ATAATGGGTT TAATCTATGT CAGATACTGA GGGCTCTGAA GCTAAATATT GTGGATTTTT TTAAAGAGTT ACCTCAGTTT GTGGTCAAGG CTGGATCTGT ACTAGGTGAA CTTTATGGCG CAGACTGGGA GAACAGACTT CAGGCAAAGG AGTTGCAGGC TAACTTTGTG CATCTTAGCC TTCTAAGCAA ATACTACAAA CGTGGGTTCC GCGAATTCTT CTTGACATAT GATGCAAACG CAGAAAAGAA CTCAGCAAAC TCTTCTACCT ATTTGGCGGA TAGTTATCGT TTTGGATGGC TACTCTTTTT GGCACTCCGA AACCATGCGT TTAGTCGATT TAAGGACCTC GTGACTTGCT CAAATGGCGT AGTTTCTATA TTGGCTATTT TATTCATACA TGTTCCTTGT CGGTTTAGAA ATTTCAGCAT CCAAGATTCT TCTCGCTTTG TTAATAAAGG TGACAAAGGT GTAGACTTGG TTGCATCACT TTGCAAGATA TATGACTCCT CTGAAGATGA GTTGAGGATA GTAATTGACA AGGCAAATAA TTTGGTAGAA ACCATATTGA AGAAAAAGCC ATCTCCAGCA TCTGATTGCC AAACTGACAA GCTAGATAAT ATTGACCCAG ATGGCTTGAC CTACTTTGAG GATTTACTGG AGGAGACGTC CATCTCATCT AGCTTGATTA CGCTAGAAAA GGATTACGAC GATGGTAAAG GCGAACTCGA TGAGAGGGTA TTCATCAATG AAGAGGATAG CTTACTTGGA TCTGGAAGCT TATCTGCTGG AGCTGTAAAT ATTACTGGTG TCAAGAGGAA AAGTGATGCT TTGAGCTCAC CTGCAAGGAC ATTGATAAGC CCACTCTCTC CTCATACGTC ACCTGCTGCT AAGACAAATG GTATTAGCGG TGCTACCAAG TTGGCAGCAA CACCAGTGAG CACAGCAATG ACAACTGCCA AGTGGCTCAG GACTGTCATA TGCCCGCTTC TGCCAAAACC TTCTCCTGGA TTGGAACATT TCCTTAAATC ATGTGACAGA GATATAACAA ATGACGTCAC ACGAAGAGCT CACATAATAT TGGAAGCTAT TTTTCCAAAT AGTTCCCTTG GTGCCCAATG TGGAGGTGGA AGTTTGCAAG CTGTTGACCT GATGGATGAC ATATGGGCAG AGCAGCGGAG ATTAGAAGCT CTCAAGTTAT ACTACAGAGT TCTTGAGGCA ATGTGTAAAG CAGAAGCTCA GATTTTGCAT GCAAGTAATC TGAACTCTTT ATTGACAAAT GAGAGGTTCC ATAGATGCAT GCTTGCTTGC TCAGCTGAAT TGGTACTGGC TACCCACAAA ACAATTACAA TGTTGTTCCC AGCTGTTCTG GAGAGGACTG GGATCACAGC CTTTGATCTC AGCAAGGTAA TAGAGAGTTT CATCCGACAT GAGGACTCTC TACCTAGAGA GTTGAGACGA CATCTGAATT CACTGGAGGA ACGGCTTCTA GAGAGTATGG TATGGGAGAA AGGCTCTTCA ATGTACAATT CTCTGATTGT TGCCAGGCCA TCGCTTGCAT TGGAGATAAA TCAGCTCGGA TTACTAGCTG AACCGATGCC ATCTCTGGAT GCAATTGCAG CACTTATTAA CTTCTCTGAA GGAGTAAATC ATGCATCATC TATTCAAAAG CATGAAACTT GTTCAGGACA AAATGGGGGG ATTAGATCGC CCAAAAGGTT ATGTACTGAT TACCGCAGTA TTCTAGTTGA ACGCAATTCC TTTACATCAC CAGTAAAGGA TCGTCTCTTG GCCTTAGGCA ACGTTAAATC CAAGATGCTG CCACCTCCGT TGCAGTCTGC ATTTGCCAGC CCAACACGGC CCAACCCAGG AGGCGGAGGA GAAACTTGTG CAGAAACTGG AATCAATATT TTCTTCACCA AGATTAATAA ATTGGCTGCT GTCAGAATCA ATGGAATGGT GGAAAGGCTA CAACTTTCGC AGCAAATAAG GGAGAGTGTA TATTGTTTCT TCCAACATGT ACTTGCTCAG CGGACTTCTC TTTTATTCAG TCGTCACATT GACCAGATCA TTCTCTGTTG CTTCTACGGA GTGGCCAAGA TATCCCAAAT GAGCCTGACT TTCAGGGAAA TCATATACAA CTACCGGAAG CAACCACAGT GTAAACCATT AGTTTTCCGC AGCGTTTATG TGGATTCGTT ACAATGTCGC CGTCAAGGGA GGATAGGGCC AGATCATGTT GACATAATCA CATTCTACAA TGAGATATTT ATTCCTGCCG TAAAGCCGTT GCTGGTAGAG CTAGGTCCTG TGAGAAACGA CCGGGCTGTG GAAGCCAATA ATAAGCCTGA AGGTCAATGT CCCGGATCGC CAAAGGTGTC TGTGTTTCCA AGTGTTCCAG ACATGTCCCC TAAAAAAGTA TCTGCAGTGC ACAATGTTTA TGTTTCTCCT CTTCGGGGAT CAAAGATGGA TGCTCTTATT TCACACAGTA CGAAGAGTTA CTATGCTTGT GTTGGAGAGA GTACACATGC TTACCAGAGC CCTTCAAAGG ACCTATCTGC CATCAACAAC CGCTTGAACA ACAGCAGCAG CAACCGCAAG AGGACGCTGA ACTTTGATGT AGAAGCAGGG CTGGTCAGCG ATTCCATGGT AGCAAATAGC CTTAACCTCC AAAACCAAAA CCAAAACCAA AATGGAAGCG ATGGATCGTC CTCAGGTGCC GCACCCCTTA AAACCGAGCC AACAGATTCA TAGATTCTCT CTCTATTTGC AACGCCAACT TCTTTTCAAC TATAGCATCT GTAAATCCTT ATGTTGCAGA GTTTGCTTTT ATGTTTAGCT TTCTAGTTTA TAGTGATCAC CTCAGGCTAT GAGCGGATGG ATCCCTTTAT TGTTTCTTTT TGTTCACTCT ATCTAACTGT GTTTAGTGTC TGTCTACTAA ATTTATTTTC CAC |
| Length | 3483 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 4680534.. 4686213 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G12280.1 |
| Description | retinoblastoma-related 1 |
| TAIR curator summary | Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. Also required for correct differentiation of male gametophytic cell types. Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA. |
| Alias | [ATRBR1][RB][RB1][RBR][RBR1][RETINOBLASTOMA-RELATED PROTEIN 1][RETINOBLASTOMA 1][RETINOBLASTOMA-RELATED][retinoblastoma-related 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10 |
Ahg947400 | NADH-ubiquinone dehydrogenase, mitochondrial, putative |
| 10.0995 |
Ahg312030 | histidine acid phosphatase family protein |
| 12.2474 |
Ahg489491 | Glutamyl/glutaminyl-tRNA synthetase, class Ic |
| 12.4097 |
Ahg478626 | CTP synthase family protein |
| 12.49 |
Ahg942264 | Threonyl-tRNA synthetase |
| 13.0767 |
Ahg315042 | BTB/POZ domain-containing protein |
| 13.0767 |
Ahg923799 | Rubredoxin-like superfamily protein |
| 16.2481 |
Ahg474164 | Calcineurin-like metallo-phosphoesterase superfamily protein |
| 16.7929 |
Ahg940006 | RP non-ATPase subunit 8A |
| 19.3649 |
Ahg919388 | pfkB-like carbohydrate kinase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|