| Annotation |
|---|
| Description | jgi|Araly1|479643|fgenesh2_kg.3__2344__AT3G21230.1 |
| Sequence |
GTTACATTTT GAAAAGAAAG TTTTTTGAGA GTAGTAAGAA GAATTAGAAT ATCCACACAA ATGGTGCTCC AACAACAAAC GCATTTTCTC ACAAAGAAGA TAGATCAAGA AGAAGAAGAA GAAGAACCTT CTCATGATTT CATTTTCCGA TCTAAGCTTC CTGATATCTT CATCCCCAAT CACCTCCCTC TCACCGATTA CGTCTTCCAC AAATTCTCCG CCGATGGCGA CGGCGATTCC TCCACCACTT GTATCATTGA CGGTGCCACA GGCCGTATCT TAACCTACGC CGATGTACAA ATCAACATGC AGAGGATTGC TGCCGGAATC CACCGGTTCG GGATCCGCCA CGGTGACGTC GTAATGCTCC TTCTCCCGAA CTCACCGGAG TTTGCTTTAT CTTTCCTCGC CGTGGCTTAC CTTGGAGCTG TCTCCACCAC CGCGAATCCG TTCTATACGC AGCCGGAAAT AGCAAAACAA GCAAAAGCCT CCGCCGCGAA GATGATCATC ACGAAGAAAT GTTTAGTAGA TAAGCTAACA ATCCTTAAAA ACGACGGCGT TTTAATCGTT TGTGTAGATG ATGACGGTGA CGGCGTTGTT TCGCCGACTG ATGATGGTTG CGTGAGTTTT ACGGAACTGA CTCAAGATGA CGAAACAGAG CTTCCTAAAC CTGAGATCTC GCCGGATGAC ACAGTGGCGA TGCCGTACTC CTCCGGGACA ACGGGACTGC CAAAGGGAGT GATGATTACT CACAAGGGTT TGGTAACAAG CATCGCTCAG AAAGTCGACG GAGAAAACCC TAACCTACAC TTCACGGCCA GTGACGTCAT CCTCTGTTTT CTCCCAATGT TTCACATTTA CGCTCTCGAC GCGTTAATGC TTTCGGCGAT GAGAACCGGT GCGGCGTTAC TGATCGTGCC TAGGTTCGAG TTGAATCTGG TGATGGAGCT GATTCAAAGG TACAAAGTCA CGGTGGTTCC GGTGGCTCCT CCGGTTGTTC TAGCATTAGT TAAGTCCCCG GATACGGAGA GATACGACTT GAGCTCGGTG AGAATGATGC TATCGGGTGC AGCTACATTA AAGAAGGAGC TTGAAGACGC CGTGCGACTC AAGTTTCCTA ATGCCATTTT TGGTCAGGGT TATGGTATGA CCGAGTCCGG AACGGTGGCT AAGTCATTAG CGTTTGCAAA GAACCCATTT AAAACCAAGT CCGGTGCGTG TGGGACTGTG ATCAGAAACG CCGAGATGAA AGTGGTCGAT ACCATAACCG GAATATCCTT ACCGCGCAAC AAATCTGGCG AGATCTGCGT CCGAGGCCAT CAGCTCATGA AAGGTTATTT GAATGATCCA GAATCTACTG CGCGAACCAT AGACAAAGAC GGGTGGTTAC ACACAGGAGA TATTGGGTTT GTGGATGATG ATGATGAGAT CTTCATTGTT GATCGGTTGA AGGAACTGAT CAAATTCAAA GGCTACCAAG TGGCTCCAGC TGAGCTTGAA GCATTGCTTA TTTCTCATCC TTCTATTGAT GATGCCGCAG TTGTTGCAAT GAAGGATGAA GTAGCTGATG AAGTTCCAGT AGCATTTGTA GTAAGATCTG AAGGGTCTCA GTTAACTGAA GAAGATGTCA AGAGTTATGT AAACAAACAG GTGGTTCACT ACAAGCGGAT CAAGATGGTG TTTTTCATAG AAGCTATACC GAAAGCAGTT TCGGGCAAGA TTCTGAGGAA GGATCTCCGA GCTAAATTGG AAACCGAGTG CTCTAAATAG ACACAAGAGA GTTTCAATTG TATGTGTAAA TTCGAACATT AAAGTCTCTA AGAAGTAAGC AGTAAGAAGC AAGTTGTTTG GTATTTGATT TGGTTTCAAG ACATCAATCA TGTAAATTCT ACACATCTAG GAGACCTAAA GCTATACTAC CCTCAGAAAC ATAAGTTCAT TTCCTATAAT CATCATTTCA C |
| Length | 1961 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 8845932.. 8850510 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G21230.1 |
| Description | 4-coumarate:CoA ligase 5 |
| TAIR curator summary | The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. |
| Alias | [4CL5][4-coumarate:CoA ligase 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 15.4919 |
Ahg907291 | S-locus lectin protein kinase family protein |
| 18.3303 |
Ahg488458 | carboxyesterase 17 |
| 19.3132 |
Ahg312360 | Protein of unknown function (DUF1262) |
| 20.4939 |
Ahg482026 | OSBP(oxysterol binding protein)-related protein 1A |
| 38.9615 |
Ahg934312 | UDP-Glycosyltransferase superfamily protein |
| 40.2989 |
Ahg926817 | Leucine-rich repeat protein kinase family protein |
| 40.4722 |
Ahg345443 | Peroxidase superfamily protein |
| 49.6991 |
Ahg475850 | Eukaryotic aspartyl protease family protein |
| 50.5272 |
Ahg482563 | plant U-box 23 |
| 53.1037 |
Ahg950049 | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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