| Annotation |
|---|
| Description | jgi|Araly1|480219|fgenesh2_kg.3__2920__AT2G06210.1 |
| Sequence |
TGCAATTACT TCTAGGGTTT GTGGTAATCG TCGCTGCAAT GGCGAGTGTG TACATACCGG TTCAGAATTC GGAAGAAGAA GTTAGGGTTG TTCTTGATCA GCTCCCTCGT GACGCTTCTG ATATACTTGA TATCCTTAAA GCCGAACAAG CTCCTCTCGA TCTCTGGCTC ATCATCGCGA GGGAATACTT CAAGCAAGGA AAAATTGAAC AGTTTCGACA AATATTGGAG GAAGGCTCAA GTTCTGACAT TGATGAGTAC TATGCTGATG TTAAGTACGA GAGAATAGCA ATCTTGAACG CTCTAGGTGC GTATTACAGC TACTTGGGTA AAACTGAGAC AAAACACAGA GAAAAAGAGG AGCAATTCAT CTTGGCAACA CGATATTATA ACAAAGCGTC GAGAATCGAT ATGCATGAGC CTTCCACTTG GGTTGGGAAA GGTCAGCTCT TACTGGCTAA GGGTGAAATA GATAATGCAC TTCAGGCATT TAAGATTGTG TTAGACACTG CCCCTGATAA TGTTCCTGCT CTTCTGGGTC AGGCTTCTGT AGAATTTAAT CGTGGACGTT TTTCTGAGTC ATTAAACCTA TACAAGAGGG CCTTGCAAGT ATTTCCTGGG TGTCCTGCAG CTCTAGATCC TGATAATGTT GAGGCTCTTG TGGCACTTGG GATCATGGAT TTGCAAGCAA ATGATTCTAT AGGAATGAGG AAAGGAATGG ACAGAATGCA GCAAGCATTT GAGATTTATC CATATTGCGC ATCAGCCCTA AATTATTTGG CCAATCACTT TTTTTTCACT GGCCAGCACT TTCTTGTTGA GCAGCTGACT GAAACGGCAT TAGCCGTCAC AACTCATGGG CCAACAAAGT CACATTCTTT TTACAATTTA GCACGGTCAT ATCATAGCAA GGGGGACTAT GAAAAGGCTG GGATGTACTA TATGGCAGCC ATCAAAGAAA CTAATAATAA GCCACAAGAA TTTGTATTTC CTTACTTTGG TTTGGGTCAA GTACAACTAA AGTTGGGGGA GCTGAAAGGA TCTGTATTTA ACTTTGAGAA AGTATTAGAA GTCTATCCCG ACAACTGTGA GACTCTGAAG GCTCTCGGGC ACTTATACAC CCAGCTTGGA CAAAATGATA AGGCCCTTGA GTACATGCGA AAGGCCACAA AACTTGATCC ACGTGATGCC CAGGCATTTG TTGGCCTTGG TGAGCTGCTG ATATCATCTG ACACAGGGGC TGCACTTGAC GCCTTCAAAA TGGCACGGAC ACTCATGAAA AAGGGAGGGC AAGAGGTGCC GATAGAAGTC CTGAATGACA TTGGTGCTTT ACATTTTGAG AGAGAAGAAT TTGAGTCTGC GCTTGACAAT TTTAAGGAGG CTCTGGGTGA TGGAATATGG ATTAGCTTCC TTGATGAGAA AGAAAATTTG GAACAAACAG GTGTATCTGT TCTAGGGTAC AAGGATACGG GCATTTTCCA TAGGCTGATT GAAAGTGGTC ACTCTGTCGA TGTTCCTTGG AATAAAGTCA CAACTTTGTT TAACCTGGCT AGATTACTTG AGCAGTTACA CAAAACAGAA GCAGCGACTT TTCTGTATCG ATTGATACTT TTCAAGTATC CTGGCTACAT AGATGCTTAT TTGAGGCTTG CTGCGAGTGC AAAAGCTCAG AACAATCTTC CTCTGGCCAT TGAACTGGTG AATGAAGCTT TGAAAGTGGA CGATAAAAAT CCAAATGCGT TGTCTCTGCT TGGTGAATTG GAGCTTAAGA ATGATGACTG GGTTAAGGCA AAGGAAACCT TTCGAGCTGC TAATGATGCG ACTGATGGGA AGGACTCATA TGCTATTCTC TCTCTGGGGA ACTGGAACTA TTTCGCGGCA ATGCGCAATG AGAAAAGAAA TCCAAAATTA GAAGCTACAC ATCTGGAGAA GGCCAAGGAA CTCTATACTA AAGTCCTGAC TCAACATAAT TCCAACATGT ATGCTGCCAA TGGTTCTGGC ATTGTATTGG CAGAGAAAGG CCAATTTGAT ATTGCCAAAG ATGTTTTTAC TCAGGTTCAA GAAGCTGCGA GTGGAAGTGT ATTTCTTCAG ATGCCTGATG TATGGGTGAA TCTGGCTCAT GTTTACTTTG CTCAAGGGAA TTTTGCCTTA GCCGTGAAAA TGTATCAAAA CTGCTTGCGG AAGTTCTTTA ACAACACAGA CTCTCAAATT CTTCTTTACT TAGCCCGTAC CCATTACGAG GCTGAGCAGT GGCAAGAGTG CAAAAAGACA CTATTAAGGG CCATTCACTT GACTCCTTCA AATTACACAT TCAGATTTGA TTTGGGTGCT GTAATGCAGA AATCATCGTC TTCCACACTG CAAAAGAAAA AAAGAACAGC TGATGAGGTG CGCTCAACAG TTGCAGAAGC TGAGAATGCT GTTCGTGTAT TCACTCAATT GTCTGCTGCT TCAGACCTCC ATGTTCATGG GTTTGATAGC AAGAAAATTC AAACCCATGT TCAGTATTGC TCGCACTTGC TGGAAGCAGC AAAAGTTCAC CGTGAAGCAG CTGAGCGTGA GGAGCTGCAG AACCGACAGA GATTAGAAGT TGCTCGTCAG GCTGCTTTGG CAGAAGAAGC ACGCCGTAAA GCTGAAGAAC AGAGGAAATA TCAGTTGGAG AAAAGAAAAC AGGAGGAAGA GCTGAGACGC CTAAAGCAAG AAGAAGAAAA AATTCAACGT ATAAAGGAAC AATGGAAGAG CTCCACACCT GGATCTCATA AGCGGAAAGA TAGAGTGGAT GATGATGACG GGGAAGGTAA GCCCAGTGAG CGGAGAAGAA AGAAAGGCGG AAAGAGAAGA AAGAAGGACA AAAGCTCAAG GGCTCGACAC TACGAGGACG ATGAAGAAGA AACTGCCACT ATGGATGATC ATAATGAAGT GGAAGATGAA GACGCCAATA ATAATTATAA CAGGGAAGAT GAGATGACAA ATCAAGAAGC TGAGGAACCT GTGGATGATG ATGCTCATGA TCTTCTCGCT GCTGCTGGGC TCGAAGATCC TGATGTTGAT GATGATGAGG TACCTGCTTC GGGGGTAAGA CGAAGAAGGG CGCTATCATC ATCAGATGAA GAAGGTGAAT TGATGGAGGA GAGTCAGCCA AATCAAAGCC CCCCCAGAGA GAAAGAAGAG AGCAACGGGG AAGGAGAAGA TGCTAACATG GAGGAAGAAG ACTAGAAGAG GAAGAGGAAG AGGCCAATTG AGATCGTTCA TACATAACAA CAGATTTCTC TTGTGTGTTT GTAACTTTAG TGACAAAGAT ATTCCATTGA TTCAATTTTT CTAGAAGTCA GAGTGTGAGG ACAAAATTTC ATTCACAGGC CAAGGATAAT CAGTTTGAAC TTTGGGTTAT TTGGATTGAG CCTTGTTTTT ATTTGCTATT GTTA |
| Length | 3424 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 13741676.. 13749627 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G06210.1 |
| Description | binding |
| TAIR curator summary | Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. |
| Alias | [ELF8][VIP6][EARLY FLOWERING 8][VERNALIZATION INDEPENDENCE 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg491411 | nuclear poly(a) polymerase |
| 1.41421 |
Ahg473006 | Pre-mRNA-splicing factor 3 |
| 4.89898 |
Ahg492193 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 5.19615 |
Ahg481027 | endoplasmatic reticulum retrieval protein 1B |
| 7.07107 |
Ahg474123 | telomere repeat binding factor 1 |
| 8.12404 |
Ahg916256 | KRR1 family protein |
| 11.6619 |
Ahg946015 | proline-rich spliceosome-associated (PSP) family protein |
| 13.0384 |
Ahg485747 | RAB GTPase homolog 8 |
| 14.6969 |
Ahg472093 | DNAJ heat shock N-terminal domain-containing protein |
| 15.4919 |
Ahg933740 | RAP |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|