| Annotation |
|---|
| Description | jgi|Araly1|482933|fgenesh2_kg.4__1993__AT2G39140.1 |
| Sequence |
TCGGAAAAAC CCAACACACC GTCTCTCTCT CACTCTCACT CCCAACGGCG AACATGGCGT CGGTGGCGGC ATCATCGCCG ATATCATTCG CTGCATCATT CCTCAAAATC AAAGCATTCC CTCTCTCTCC TCGCTTCTTC CCCATCCGTA CACTCCGTTG CTCTGTCTCC TCCTCCTCCT CCTCTGAGCC CATCGAATTC GACATCTCCT TCGCTCCTCC GAAACCCAAA CCCTCCTCCA CTCGCGGCGG CGCCACCCCT CAACAACTCT TCATCCCTTG GATCGTCCGA GGTGATGACG GCACTCTCAA ACTCCAATCT CAACCTCCCG CTCGTTTAAT CCACAATCTC GCCATTGATG CCACTACTCA AAACCCTAAG AAGAAAGATA AACCTAAGAA GAAACAACCT CAAGCTACTT CCTCCTCCGC CACCGCTTCC TCCTCAGCCT CCTCTCCAGC TTCACACTCA GAGGTAAAGC CAAAGCTATC CAAAGCGGCG CGTAGGTTTT ACAATGAGAA TTTCAAAGAA CCTCCTCAAC GTTTAAGCAA AGTTCTCGCT GCTGCTGGAG TGGCATCAAG AAGAACCTCT GAAGAACTTA TATTTGATGG AAAGGTTACT GTTAATGGTA TTCTCTGCAC CACTCCACAG ACTCGAGTTG ATCCATCAAG AGACATTATT TATGTTAATG GAAATCGTAT TCCCAAAAAA CTTCCTCCAA AGGTTTATTT TGCTCTGAAC AAGCCTAAAG GATATATTTG TTCTTCCGGA GAGAAAGATA TCAAATCTGT TATTAGTTTG TTTGACGAGT ACATGGCCTC TTGGGATAAA AGGAATCCGG GGATTCCCAA ACCTCGTCTT TTTACTGTTG GTCGTCTTGA CGTTGCCACA ACAGGATTGA TAGTTGTTAC AAATGATGGA GATTTCGCAC AGAAACTTTC ACATCCTTCA TCTAGTTTAC CGAAAGAATA TATTACCACG GTTGTCGGTG ATATACACAA ACGACACTTA ATGGCTATCA GCGAAGGCAC AGTTGTGGAA GGAGTCCACT GTGTCCCAGA TTCAGTTGAG TTGATGCCAA AGCAGCATGA TATACCAAGA GCAAGGCTAC GTATTGTGGT TCACGAAGGG AGAAACCATG AAGTCAGGGA ATTAGTGAAA AATGCTGGGC TTGAGGTTCA TTCATTGAAG CGTATTCGTA TAGGTGGATT CAGACTTCCT TCAGATCTTG GGCTAGGGAA GCATGTGGAG TTGAAGCAGA GCGAGCTAAA GGCAATGGGT TGGAAGAATT GAAGATGTGC CATTTATCAA ACAATTAAAA CTCTGTTACC ATTAGAAGAA AAAAAAAACA GAATATAATT GTTTAGTTTA T |
| Length | 1371 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 18013136.. 18016184 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G39140.1 |
| Description | pseudouridine synthase family protein |
| TAIR curator summary | Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins. |
| Alias | [PDE328][SVR1][PIGMENT DEFECTIVE 328][SUPPRESSOR OF VARIEGATION 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg487695 | |
| 4 |
Ahg937609 | Nucleic acid-binding, OB-fold-like protein |
| 4.89898 |
Ahg492111 | HIS HF |
| 6.9282 |
Ahg944081 | Ribonuclease III family protein |
| 7.68115 |
Ahg490741 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 8.24621 |
Ahg488288 | Pseudouridine synthase family protein |
| 11.225 |
Ahg921642 | |
| 12.6491 |
Ahg484185 | IQ-domain 29 |
| 13.6748 |
Ahg483127 | NAD-dependent glycerol-3-phosphate dehydrogenase family protein |
| 13.6748 |
Ahg928272 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|