Detail



ID : Ahg490741

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|490741|fgenesh2_kg.7__174__AT4G39620.1
Sequence
ATGGACTACT TGTTGACATC ACCTTCGTCA CTGAGATTCT CCGATTTCAT CTCTTCCTTT CCCCAAGAAA CCGACCACAA ATGGCTTCGC TTGTCAATGA ATCTCGGCGT TACGAGGAGG TCGACGAAGA CGAGGATAAC TTGCGGTGCG ATTTCGTCAA GGAGGAAACT TGCTGAGAGA GAGAGTGCGG AGAGAGAGAA TAGAGTGCTG GTTCGGAGTC TCATGTCGAG GATTAGTGAC AAAGAACCAT TGGTGAAGAC GCTTGATAAG TACGTTAAGG TCGTAAGATG TGACCATTGT TTCTTACTCT TTGAAGAGCT TGGGAAAAGC GATAAGTGGC TACAATGCCT CGAGGTGTTC AGGTGGATGC AGAAACAGCG GTGGTATATC CCAGATAATG GAGTTTACTC GAAATTGATA TCCGTAATGG GGAAAAAGGG TCAAACCCGG ATGGCAATGT GGTTGTTTTC CGAGATGAAA AACAGTGGGT GTCGTCCTGA TGCTTCTGTT TATAATGCCC TCATAACGGC TCATCTTCAT ACACGGGACA AGGCAAAAGC TTTGGAGAAA GTCCGTGGAT ACTTTGACAA AATGAAAGGG ATGGAACGGT GTCAACCCAA TGTTGTGACT TATAATATCT TGTTGAGGGC TTTTGCTCAA TCCGGTAAAG TGGACCAAGT TAATGCTTTG TTTAAGGACT TGGATATGAG TCCAGTTTCT CCAGACGTCT ACACCTTCAA CGGTGTTATG GATGCGTATG GGAAAAACGG GATGATTAAG GAGATGGAAG CTGTGCTTAC TCGTATGAGG AGTAACGAGT GTAAGCCAGA TATCATCACC TTTAATGTGC TTATTGACTC GTATGGTAAG AAGCAAGAGT TTGAAAAGAT GGAGCAGACT TTCAAGAGTT TAATGCGGTC CAAGGAGAAG CCAACTCTGC CTACATTCAA TTCAATGATT ATAAATTACG GGAAAGCTCG TATGATAGAT AAGGCGGAAT GGGTTTTCAA GAAGATGAAT GATATGAACT ACATGCCAAG TTTTATCACA TATGAGTGCA TGATCATGAT GTACGGTTAC TGTGGCTCTG TTTCCAGAGC TAGGGAAATA TTTGAGGAGG TTGTTGAATC TGAGAGGGTG TTGAAGGCGT CAACACTCAA TGCCATGCTT GAAGTTTACT GTCGTAATGG TCTTTACACG GAAGCAGATA AGCTTTTCCA TAACGCAAGT GCTTTTCGGG TTCATCCAGA TGCATCGACG TATAAGTTTC TATATAAGGC ATACACCAAG GCAGATATGA AGGAGCATGT CCAGATACTG ATGAAGAAAA TGGAGAAAGA TGGAATTTTT TCGGGTCAAG ACTACCTGGT TCGGATTCTG AAAACAGGAA ATAATCTCGT TCGAGCAGGC CACGAGACAG TCCTAAGGAC GTGTCCTTTC CTAAGCCATG ATGATGACTC TACCGTCATA GCTAGAGTTT CAGCGGACAT AAGCATGTTT CCAGACCTGT TCAAGATTGC AGAAGAAAAC TGCAGAAAGA ACTATTTGGA GAACTTGAGT GGACATGATA AAGTTTCCAG GGATGAATTA AGAAAGCGTA GTCAAGAAAA GCAGCCACTA TTTGCTTCAG TTCAAAATAA TATGATATCA AAGAGAAAAA AAAAACTATT CACTAGAAAC TTGTAA 
Length1686
Protein Sequence
Protein Residue
Map Locationscaffold_7: 623725.. 625994
Download Sequence
A.thaliana
AGI-codeAT4G39620.1
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
TAIR curator summary
Alias[ATPPR5][EMB2453][A. THALIANA PENTATRICOPEPTIDE REPEAT 5][EMBRYO DEFECTIVE 2453]
Gene coexpression
MR
MR Locus Description
7.68115 Ahg482933 pseudouridine synthase family protein
9.38083 Ahg923384 presequence protease 2
13.4907 Ahg324042
15.0997 Ahg480928 STRUBBELIG-receptor family 1
19.8242 Ahg324617 embryo defective 1703
20.1246 Ahg473002 P-glycoprotein 14
24 Ahg944216
29.1033 Ahg495503 Transducin/WD40 repeat-like superfamily protein
30.9839 Ahg493742 plasmodesmata-located protein 7
31.6702 Ahg921783 no pollen germination related 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression