| Annotation |
|---|
| Description | jgi|Araly1|484121|fgenesh2_kg.5__113__AT2G01980.1 |
| Sequence |
TCTTCTTCCT CTCTGTTGTT GTCAAAGAAA ATGGCGACTG TAATCGACGC GACGATGACT TATCGATTTC TGGAGGAAGA GACCGGTTCG TCTTCTTCTT CCAAAGTAGA ATCTAGCCCC GTCGACGCCG TTCTCTTCGT CGGAATGTCT CTGGTGCCCG GTATTGCTTC TAGGCATTTG CTTCGTGGAA CTAGGGTTCC TTACACCGTC GCTCTTCTCG TTATCGGAAT TGCTCTTGGA TCTCTCGAAT ATGGAGCTAA ACATAACCTT GGAAAGATCG GCCATGGAAT TCGTATCTGG AATGATATCG ATCCTGAACT TCTTTTGGCT GTTTTTCTTC CGGCTCTTCT TTTCGAAAGT TCGTTTTCAA TGGAAGTTCA CCAGATCAAG AGGTGTCTGG GACAAATGGT GTTACTTGCT GGCCCTGGAG TTCTTATTTC AACAGCTTGT CTCGGATGGC TTGTGAAGGT CACGTTTCCG TATGACTGGG ACTGGAAAAC GTCGTTGTTG CTTGGGGGAC TTCTAAGTGC TACCGACCCT GTTGCTGTTG TTGCTTTATT AAAGGAGCTT GGTGCTAGTA AGAAGCTAAG CACCATAATT GAAGGGGAAT CCCTGATGAA TGATGGGACG GCGATTGTGC TTTTCCAGTT ATTCTTAAAG ATGGTGATGG GACAAAACTC TGACTGGGGT TCTATAATCA AATTTCTGCT TAAAGTCGCA CTTGGAGCTG TAGGCATTGG TCTGGCGTTT GGCATTGCAT CAGTTATTTG GCTCAAGTTC ATATTCAATG ACACTGTAAT AGAGATTACT CTTACAATTG CAGTGAGCTA TTTCGCATAC TACACTGCTC AAGAGTGGGC TGGGGCTTCT GGTGTTTTGA CGGTGATGAC TTTGGGCATG TTTTATGCTG CACTTGCAAG GACAGCCTTT AAAGGTGACA GTCAAAAAAG TTTGCATCAC TTCTGGGAAA TGGTTGCATA TATTGCAAAT ACTTTGATAT TTATCCTCAG TGGTGTTGTC ATTGCTGAAG GCATTCTCGA CAGCGATAAG ATTGCCTACC AAGGGAATTC ATGGGGATTT CTTTTTCTAC TATATCTTTA CATCCAACTA TCGCGTGGTG TTGTTGTTGG AGTTCTATAT CCATTGTTAT GTCGTTTTGG CTATGGTTTG GATTGGAAAG AATCCATTAT ACTCGTATGG TCTGGTTTGA GGGGTGCAGT GGCTCTTGCA CTTTCTTTAT CCGTGAAGCA ATCAAGCGGA GATTCACATA TCAGCAAGGA GACTGGAACA TTGTTTCTTT TCTTCACGGG TGGAATTGTG TTCCTAACTC TGATAGTTAA TGGATCCACT ACCCAATTTG TTCTACGCCT TCTTCGCATG GACATTTTAC CAGCCCCCAA GAAACGAATA TTGGAATATA CAAAGTACGA AATGCTGAAT AAGGCCTTAC GAGCGTTTCA AGATCTAGGA GATGATGAGG AGCTAGGACC TGCTGACTGG CCTACAGTTG AGAGTTATAT TTCAAGCCTA AAAAATTCAG AAGGGGAACT AGTTCATCCT CACAATGGTT CTAAAAGTGG AAATCTTGAC CCTAAGAGTT TAAAGGACAT ACGTATACGG TTCTTAAATG GTGTGCAAGC AGCTTACTGG GAGATGCTTG ATGAAGGCAG AATATCTGAG ATTACTGCTA ATATTTTGAT GCAGTCAGTG GATGAGGCTC TTGATCAAGT TTCTACAAGT TTATGTGATT GGAGAGGTCT AAAACCACAC GTCAATTTCC CAAATTACTA CAAGTTTCTT CATTCTAAAA TTATCCCACA CAAGTTGGTC ACATACTTTG CTGTCGAAAG ACTGGAATCT GCTTGCTACA TTTCTGCTGC ATTTCTTCGC GCGCATACAA TTGCACGACA GCAATTGTAT GATTTTCTAG GGGAGAGTAA TATTGGTTCC ATTGTAATCA ATGAAAGTGA AAAGGAAGGA GAGGAAGCGA AAGAGTTCTT GGAAAAAGTC CGATCTTCAC TTCCTCAGGT TCTCCGTGTT GTGAAAACAA AACAAGTAAC GCATTCAGTG TTGAATCATT TACTGGGTTA CATTGAAAAC CTCGAGAAGG TTGGCTTGTT GGAGCAAAAA GAAATCGCTC ATCTTCATGA TGCTGTCCAG ACCGGCTTGA AAAAGCTTTT GAGAAACCCT CCAATAGTTA AACTTCCAAA ATTGAGCGAC ATGATCACCT CACATCCGTT ATCCGTTGCT CTTCCTCCCG CAATATGTGA ACCTCTAAAA CATTCGAAAA AAGAACCAAT GAAGCTGCGT GGTGTCACAC TTTATAAAGA AGGTTCAAAG CCAACTGGAG TCTGGCTTAT TTTTGATGGC ATTGTTAAGT GGAAAAGCAA AAGCTTAAGC AATAATCACT CGTTGCATCC AACTTTTTCT CACGGTAGTA CATTGGGACT CTACGAAGTC CTCACTGGGA AGCCATATAT GTGTGACATG ATTACAGATT CTATGGTTCT TTGCTTTTTC ATCGATAGCG AAAAAATTCT CTCACTACAA TCAGATTCTA CCATCGATGA TTTCCTTTGG CAGGAAAGTG CATTGGTTCT TCTGAAACTC TTGCGTCCTC AGATATTTGA AAATGTGGCT ATGCAAGAAT TACGAGCCCT TGTTTCAACT GAAAGCTCGA AACTGACAAC ATATGTGACG GGAGAATCAA TCGAAATCGA CTGCAACAGC ATTGGTTTGT TATTAGAAGG ATTCGTAAAA CCGGTTGGTA TCCAAGAAGA GCTTATATCA TCTCCCGCCG CATTATTACC TTCTAACGGG AATCAAAGCT TCCATAATTC ATCAGAAGCT TCAGGTATCA TGAGAGTGAG TTTCTCACAA CAAACAACAC AATACAGTGT TGAGACAAGA GCAAGAGCAA TCATCTTCAA CATTGGAGCA TTTGGAGCTG ATAGGACTCC ACATCGAAGA CCATCTACGT TAACACCACC ACGTAGCTCA AGCTCTGATC AGCTTCAGAG ATCATCATTT CGTAAAGAAC ACAGAGGTCT CATGAGCTGG CCTGAAAGTA TTTACAAAGC CAAACAACAA CAAGAGATCA ATAGAACGGC ATTAAGTTTA TCTGAACGAG CAATGCAACT CAGCATTTTC GGCAGCATGG TCAATGTTTA CAGAAGGAGT GCAAGTTTCG GTGGGATCTA TAATAACAAG TCACAAGATA ACTTTTTGTA CAAAAAACAT CCACTAAACT CAGCTCAAGG TCTCGTTTCA GCCAGATCAG AAAGTTCGAT TGTGACCAAG AAGCAGCTTG AAACCCGTAA ATATCCGTGT CAGGTTCCTC TGCAAGCGGA AAGCAGCAAA AGGCGAAATA CGATGGTTGT TGAATCAAGC GATGAAGAAG ATGAAGGAAT CGTTGTGAGA ATCGATTCTC CGAGTAAAAT CGTTTTCTGG AACGATCTAT GAGCAGTGAG ATGTTTGTAA CATAATAAAA CAAAAATGTT AGCTTACTCT ATGTTGATAG AAGATGTGAA AATCATT |
| Length | 3537 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 579542.. 585733 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G01980.1 |
| Description | sodium proton exchanger, putative (NHX7) (SOS1) |
| TAIR curator summary | Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. |
| Alias | [ATNHX7][ATSOS1][SOS1][ARABIDOPSIS NA+/H+ ANTIPORTER 7][ARABIDOPSIS SALT OVERLY SENSITIVE 1][SALT OVERLY SENSITIVE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.7178 |
Ahg478143 | PHD finger family protein |
| 18.1108 |
Ahg478706 | WW domain-containing protein |
| 35.327 |
Ahg910040 | switch 2 |
| 37.7492 |
Ahg495073 | C2 calcium/lipid-binding and GRAM domain containing protein |
| 40.0375 |
Ahg474732 | |
| 46.3573 |
Ahg480909 | Tetraspanin family protein |
| 46.5833 |
Ahg477924 | F-box family protein |
| 46.6476 |
Ahg487239 | HhH-GPD base excision DNA repair family protein |
| 46.7226 |
Ahg944727 | Regulator of Vps4 activity in the MVB pathway protein |
| 46.8828 |
Ahg477535 | RING/FYVE/PHD zinc finger superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|