| Annotation |
|---|
| Description | jgi|Araly1|487239|fgenesh2_kg.6__373__AT5G04560.2 |
| Sequence |
CATTGACTCG CCTGAGAATC AGAAGCTTAG ATCGATTCTT AGTTAATGTC GCCTTCTCTT CCCAAGTTTG ATTTAAAGGA GTGTTCGTCC ATGTAGCTTG GTTTTGGTGT TTGGTGAGAG TTTTCGGAGA GTTAGGTAGA AGCATTTGGG TGAGGTAGTG ATAAGGTTGA AGGGGGAGTG ATTCATTGGT TCCACACTAG TGTGGTATGA ATTCGAGGAC TGATCCCGGG GATGGCTATT TTCGACTTCC TTTGGAGAAT CAAACCCAAC ATGAGTTCCA ATTCATGGGT TCTTGGATTC CATTTACACC CAAGAAACCT CTTCAAGGTG GTGGTAGATC AAGTCTGATC GTAGATGAGA GACTGATACA CCAGGATCTA AATGTGGTTC CAGGTGTTGA ATTTGTAGAG AGGGCATTCT GCAACAGTGG TGTGGATCAT AATGGGGTTT ATGACCATGG TGCTCATCAG GGCGTGACCA ACTTAAATAT GATGATTAAT AGCTTAGCGG GATCACATGC ACAGGCTAGG AGTAATAGTG AGAGAGATCT TTTGGGCAGG AGTGATGTGA CTTCTCCTTT AGCACCCGTT ATCAGAAACA CCACCAGTAA TATAGAGCCG GTCAATGGAA AATTTTCTTC AAATGTGGGT ATGGTAAACG GTCCTTTCAC CCAGAGTGGC AGTTCTCAAG CTGGCTATAC TGAGTTTGAA TTGGACGACT TGTTGAATCC CGATCATATG CCCTTCTCCT TCACAAGCTT GCTGAGTGGT GGGGATAGCT TATTCCAGGT TCGTCAATAT GGAACTCCAG CGTGTAGCAA GCCTCTTTAC TATTTGAATT CACCAATCAG AAGAGAAGCA GTTGGGTCAG TCTGTGAAAG TTCGTTTCAA TATGTACCGT CAACCCCCAG TCTGTGCAGA ACAGGTGAAA AGAATGGATT CCTTGAACAG ATAGTTACAA CCATTGGACA TGAAATCACA GAGCCGAAAT CTGACAAAAG TATGCAGAGC ATTATGGACG CGTCTGCTGT TAATGCGACG GAAGTTACTG AACAAAATGA TGGCAGCAGA CAAGATGTTC TGGAGTTTGA TCTTAACAAG ACACCTCAGC AGAAACCCTC CAAAAGGAAA AAGAAGTTCA TGCCCAAGGT GGTCGTGGAA GGCAAACCTA AAAGGAAGCC ACGCAAACCT GCAACTCAGG AAAAAGTGAA TTCTAAAGAA ACCGGGAGTG GCAAAAGGAA AAAAGCTCAA AAGACAAACT TGAAAGAATC AGCAACTAAA AAGCCAGCCC ATGTTGGAGA TATGAGCAAC AAAAGCCCTG AAGTCACACT CAAAAGTTGC AGAAAAGCTT TGAATTTTGA CTTGGAGAAA TCTGGAGATG CGAGGCAAGG TGACTCTGAG TTTGAAATTG TCCAGAACAA TAATGGCGCA AACTCATTTT CTGAGATCAG AGATGCCATT GGTGGAACTA ATGGTAGTTT TCTGGATTCA GTGACACAAA TAGGCCAGAC CAATGGATTG GTGGCTACGT ACCAGCCACA TGAAGTGTCA ATGGGAAACC AGCCAGATAA ACTATCAACG GAAGCGAAAC TGGCCAGAGA CCAGCAACCT GATTTATTGA CTAGAAACCA GCAATGCCAG TTCCCAGTGG GAACCCAGAA CACCCAGTTC CCAATGGGAA ACCAACAAGC TTGGCTTCAG ATGAAAAACC AACTTATTGG CTTTCCATTC GGTAACCAGC AACCTCGCAT GACCATAAGA AACCAGCAGC CTTGCTTGGC CATGGGTAAT CAACAACCTA TGTATCTGAT AGGAACTCCA CGGCCTGCAT TGGTGAGTGG AAACCAGCAA CTAGGAGGTC TCCAAGGGAA CAAGCAGCCT ATATTTTTGA ATCAGCAGAC TTGTTTACCT GCTGGAAATC AACAATATGG ATCACCGACA GACATGTATC AGCTTGTTAT GTCAACCGGA GGGCAACAAC ATGGACTACG GATGAAAAAC CAGCAACCTG GATTTTTGTT GAGAAACCAG CAGCCTGGAT CATCTATGAG AGGCCAGCAG CCTTGCGTAC GTTTGATGAA CCAGCAACCT GGAACTCCAA AAGGTTTTAC TCACTTGAAT CAGATGGTCG CTTCCTGCAT GTCATCGCCT GGGCTTCAAC CTCATTCTCA GTCACAAGTT CCTTCAACAA ATTTATATGT GGAATCTGTT TCCAGGAGTT TGAATGGGAC TACAGGTGCA TGTCATAGAA GCAGCGCTCC TGAATACGGT TCTTTACAGC AAGATATCCA TCAAGGAAAT GAGTACATCC CTTCTCATGA GAGATCCAAT GGTGAATTCT TTGACGTATG CAAAAAAGTA GTATCTCAAA ACTCTTCTTT GCCAACCCCA ATTATGGCTA AACTTGAGGA AGCCAGGGGC TCGAAGAGAC AGTATCATCC TGCAATGGGA CAGATGGAAA ACCATGATCT AAACTTAGCA GATTTGGAGA GACACATGAC TCAATCACAA GATGTGGAGA GACATAACAG CAGACAGTGT GCCAAATATT TAGGTGCTGC AAAGAAAATG AAAATCCAGA AAGTAGTCCA AGAAAATTTG CATGGCATGC CACCTGAGGT AATAGAAATC GAGGATGATC TAACTGATGG GGCAAGAAAG GATAAAAGCA TCATTAAAAC TGCATCTAAA CGAATTTCGT GTTCAGTTCA AAAGTCAGCA GATAATGAGA AATGTATTGT CCCCAAAACG CCTGCAAAAA GGGGTCGTGC AGGGAGAAAA AAATCAGTAC CTCCGTCTGC TCATGCCTCA GAGATCCAGC TTTGGCAACC TACACCTCCA AAGACACCTT CATCAAGAAG CAAGGCTAAA GAAAAAGGGA GGATGTCCAT TCAAGATTCA GGAAAAGCAA GAGGTCCATC AGGAGAACTT CTATGTCTGG ATTCTATTGC GGAAATAATA TACAGGATGC AGAATCTGAA TCTAGGAGAC AAAAACAGAG AACAAGAGCA AAATGCACTT GTCTTGTACA GAGGAGATGG TGCGGTTGTT CCATATGAGA GCAAGAAGCA AAAACCAAGG CCTAAAGTTG ACCTTGATGA TGAAACAACT CGGATATGGA ATCTATTGAT GGGTAAAGGA GAAAAAGAGG GGGATGAAGA GATGGATAAG AAAAAAGAGA AGTGGTGGGA AGAAGAGAGG AGAGTTTTCC GAGGAAGGGC CGATTCATTC ATCGCCCGTA TGCATCTTGT ACAAGGAGAT AGACGTTTTT CGCCATGGAA GGGATCAGTG GTTGATTCGG TCATTGGAGT TTTCCTTACA CAGAATGTCA CGGATCACCT TTCAAGCTCT GCTTTCATGT CTCTAGCTGC TCGATTCCCT CCAAAATCAA ACAGCAGCCG AGAAGATGAA AGGAATGTTA GAAGCGTAGT TGTTGAAGAT CCAGAAGGAT GCATTCTGAA CTTAAATGAA ATTCCTTCGT GGCAGGAAAA GGTTCAAAAT CCATCTGACA TGGAAGTCTC TGGGGTTGAT AGTGGATCAA AAGAGCAACA AAGGGACTGT TCAAACTCTG GAATCGAAAG ATTTAATTTC TTAGAGAAGA GTAGTCAAAA TTTAGAAGAG GAAGTATTAT CATCACAAGA TTCTTTTGAT CCTGCGATAT TTCAGTCGTG TGGGAGAGTT GGATCCTGTC TATGTTCCAA ATCAGACGCA GAGTTTTCTA CAACCAGGTG TGAAACAAAA ACTGTCAGTG GATCATCACA ATCAGTGCAA ACTGGGAGTC CAAACTTGTC TGATGAAATT TGTCTTCAAG GGAATGAGAG ACCGCTTCTA TATGATGGAT CTGGTGATGT TCAGAAACAA GAAACTGCAA ATGTCGCTCA GAAGAAACCT GATCTCGACA AAATAATGAA CTGGAAGGAC TCTCTCTCTT TTGGTCAGCC AAGCAATGAT ACTAATTGGC AAAAAAAAGG ACCGACCAAT CCTTCCAGCA GCTATGAGCA GAGTACGATT CAACAGCCAC ATGTAATAGA CATAGAGGAT TTTGGAATGC AAGGTGAAGG CCTTGGTTAT CCTTGGCTGT CCATTTCACC AAGAGTTGAC AGAGGAAAGA ACAAAAACGT ACCACGCAGA TTTTTCAGAC AAGGTGGAAG TGTTCCAAGA GAATTCACAG GTCAGATCAT ATCATCAACG CCTCATGAAA TGCTAGGAAT GGGATTGTTT GCTTCCTCAA GCGCCCTCCA AGTGCACCAG GACGATACCC AACATAATCA ACAAGATGAG ATGAATAAAG CATCCCATTT ACAAAAAACA TTTATGGATC TGCTCAACTC TTCTGAAGAA TGCCTTACAA GACAGTCCAG TACCAAACAG AACATCACGG ATGGCTGCCT ACCGAGAGAT AGAACTGCTG AAAACGTGGT TGATCCCCTC AGTAAAAATA CAAGCTTACA GAACATATTG GTCGAATCGA ATTCCAGCAA TAAAGAGCAG ACAGCAGTTG AATACAACGA GACAAATGCC ACTATTGTAC GAGAGATGAA AGGGACGCTT GCTGATGGGA GAAAGCCTAA AAGCCAGTGG GATAGTCTCA GAAAAGATGT GGAGGTGAAT GAAGGGAGAA AGGAAAGAAG CAAAGACAGT ATGGATTCCA TAGACTATGA AGCAATAAGA CGTGCTAGTA TCAGTGAGAT TTCTGATGCT ATCAAGGAAA GAGGAATGAA CAACATGTTG GCGGTACGAA TTAAGGATTT CCTAGAAAGA ACAGTTAAAG ATCATGGTGG TATCGACCTT GAATGGTTGA GAGATGTTCC TCCTGATAAA GCCAAGGACT ATCTCCTGAG CATAAGAGGT CTGGGTTTGA AAAGTGTTGA ATGCGTGCGA CTCTTAACGC TCCACAACCT TGCTTTCCCT GTTGACACGA ATGTTGGAAG GATAGCCGTT AGGCTGGGAT GGGTGCCTCT ACAACCTCTA CCTGAATCAC TTCAGTTACA CCTTCTAGAG CTATACCCTG TGCTTGAGTC CATCCAAAAA TTTCTTTGGC CAAGACTCTG CAAACTCGAT CAACCAACAC TGTATGAATT ACACTACCAG CTGATTACGT TTGGAAAGGT ATTTTGCACA AAGAGTAGAC CAAATTGTAA TGCATGTCCA ATGAGAGGAG AATGCAGACA CTTTGCCAGT GCTTATGCTA GTGCAAGACT TGCTTTACCG GCACCGGCAC CAGACGAGAG GAGCTTAACA AGTGCAACTA TTCCGGTCCC TCCCAAGTCC TTTCCTCCTG TAGCCATCCC GATGATAGAA CTACCTCTTC CGTTGGAGAA AGCCCTAGCA AGGGGCGCAC CATCGAATAG AGAAAACTGT GAACCAATAA TTGAAGAGCC GGCCTCGCCC GGGCAAGAAT GCACTGAGAT AACAGAGAGT GATATTGAAG ATGCTTACTA CAATGAGGAC CCTGACGAGA TCCCAACAAT AAAACTCAAC ATTGAACAGT TCGGAATGAC TCTACGGGAA CACATGGAAA GAAACATGGA GCTCCAAGAA GGTGACATGT CCAAGGCTTT GGTTGCTTTG AATCCAACCA CTACTTCTAT TCCAACTCCC AAACTAAAGA ACATTAGCCG TCTCAGGACA GAGCACCAAG TATACCAGCT CCCGGATTCA CATCCTCTCC TCGATGGTAT GGATAAAAGA GAACCAGATG ATCCAAGTCC TTATCTCCTA GCTATTTGGA CACCAGGTGA AACAGCGAAT TCGGCTCAAC CGCCTGAACA GAAGTGTGGA GGGAAAGCGT CTGGCAAAAT GTGCTTTGAC GAGACTTGTT CTGAGTGCAA CAGTGTGAGG GAAGCAAACT CACAGACAGT TCGAGGGACT CTTTTGATAC CTTGTCGAAC TGCCATGAGA GGAAGTTTTC CGCTCAACGG GACATACTTT CAAGTTAACG AGTTATTTGC AGACCACGAG TCCAGTCTCA ATCCCATCGA TGTTCCTAGA GATTGGATAT GGGATCTCCC GAGAAGGACT GTTTACTTCG GAACATCAGT AACATCAATA TTCAGAGGTC TTTCAACGGA GCAGATACAA TTCTGCTTTT GGAAAGGATT CGTATGTGTC CGTGGATTCG AACAGAAGAC AAGAGCACCA CGTCCATTAA TGGCAAGGTT GCATTTTCCG GCGAGCAAAT TGAAGAACAA CAAAATCTGA TGATGAATGG ATTAAAGAAA ACACATTGCT TCTCTGCTCT CCTCTATTTA AAGGCAAGGA AAAGACCCAT TTAGGCATAA AAACAGGAAA CCAAATAGGC TTCTTTTTTT TTTCTCTTTC TTTCTGACTT CATTCTTAGA GAAGAAGCAA CACAAACAAG TTTTTTGGGT TATTTATTTT CTCTCTAACA AATTTGTAGC ATTTGGGTCT TTTTGGTTGT CACTAGCGTG GCAAATCCAA TGCCTGCGCA CACAGGCGCA TTGTCAATAA ATTTCTCCGG CCACCGGAGT ATTTAGCATC TTTCAACCGG CG |
| Length | 6512 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 1489534.. 1499046 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G04560.2 |
| Description | HhH-GPD base excision DNA repair family protein |
| TAIR curator summary | Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. |
| Alias | [DME][DEMETER] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.32456 |
Ahg495194 | VEFS-Box of polycomb protein |
| 6.48074 |
Ahg495713 | |
| 8 |
Ahg486936 | HEAT repeat-containing protein |
| 9.74679 |
Ahg483124 | PRP38 family protein |
| 10.9545 |
Ahg311694 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 11.1803 |
Ahg474506 | cyclophilin 59 |
| 11.5326 |
Ahg318458 | calmodulin binding;transcription regulators |
| 14.0712 |
Ahg490595 | Patched family protein |
| 14.6969 |
Ahg492898 | RING/U-box superfamily protein |
| 16.7332 |
Ahg476305 | SEC6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|