| Annotation |
|---|
| Description | jgi|Araly1|485204|fgenesh2_kg.5__1196__AT3G48430.1 |
| Sequence |
ATGGCGGTTT CAGAGCAGAG TCAAGACGTG TTTCCATGGC TTAAATCGTT ACCGGTTGCT CCAGAGTTCA GACCTACTTT AGCAGAGTTT CAAGATCCGA TCGCTTACAT TTTGAAGATT GAAGAAGAAG CTTCTAGATA TGGAATCTGT AAAATTCTTC CTCCACTGCC TCCTCCTTCT AAGAAAACCT CGATTTCTAA CCTCAACCGT TCTCTGGCGG CAAGAGCGGC GGCGAGGGTT CGTGACGGCG GCTTTGGCGC GTGTGATTAT GACGGTGGTC CCACATTCGC CACGCGGCAA CAGCAGATCG GGTTTTGCCC TAGGAAGCAG CGTCCGGTGC AGAGACCTGT GTGGCAGAGT GGAGAGGAGT ACTCTTTTGG TGAGTTCGAG TTTAAAGCTA AGAACTTTGA GAAGAATTAT CTCAAGAAAT GTGGTAAAAA GAGTCAACTC TCTGCCCTAG AAATCGAAAC CCTTTACTGG AGAGCAACAG TGGATAAACC CTTCTCTGTT GAGTATGCCA ATGATATGCC TGGCTCTGCT TTTATCCCTC TGAGTCTGGC TGCTGCCAGG AGGAGAGAGT CTGGTGGTGA CGGAGGAACA GTTGGTGAGA CTGCTTGGAA CATGAGGGCA ATGTCTAGAG CCGAAGGATC ATTGCTTAAG TTCATGAAAG AGGAGATCCC TGGAGTTACA TCACCAATGG TGTATATTGC TATGATGTTT AGTTGGTTTG CTTGGCATGT GGAGGACCAT GACCTTCATA GTCTCAATTA CTTGCATATG GGTGCTGGTA AGACTTGGTA TGGCGTGCCA AAGGATGCTG CTGTGGCTTT TGAGGAGGTG GTTAGGGTTC ATGGTTATGG TGGAGAGCTC AATCCTCTTG TGACATTTTC TACTCTTGGT GAGAAGACAA CTGTGATGTC TCCTGAAGTA TTTGTTAAAG CCGGAATACC ATGTTGCAGA TTAGTGCAAA ATCCTGGAGA TTTTGTCGTC ACCTTTCCGG GAGCTTATCA TTCGGGATTT AGTCATGGAT TCAATTTTGG AGAAGCATCG AACATTGCAA CTCCCGAATG GTTGAGAATG GCTAAAGATG CTGCTATCCG GCGAGCTGCA ATAAATTACC CTCCTATGGT TTCACATCTC CAGCTACTTT ATGACTTTGC ATTGGCTCTA GGTTCTAGAG TGCCAACAAG CATCAATGCG AAACCACGGA GTTCTAGATT AAAAGATAAG TTAAGAAGCG AAGGAGAAAG ATTGACCAAA AAGCTATTTG TGCAAAACAT TATCCACAAC AACGAATTGC TTTCTTCTCT CGGAAAAGGA TCCCCAGTGG CCCTTCTCCC ACAGAGTTCC TCAGATATAT CAGTTTGTTC TGACCTGCGA ATCGGATCCC ATTTGATAAC CAACCAGGAA AACCCAATCC TATTAAAGTC TGAGGACTTA AGTTCTGATA GTGTTATGGT TGGTCTCAGT AACGGTTTAA AGGATACAGT TTCAGTGAAA GAAAAATTTA CATCCTTATG TGAAAGGAGC AGAAATCACC TAGCAAGCAG GGAGAAGGAC ACTCAAGAAA CTCTATCTGA TGCCGAAAGG AGGAAAAATG ATGGAGCTGT TGCACTTTCT GATCAAAGGC TTTTCTCTTG TGTTACATGT GGAGTCTTAA GCTTTGATTG TGTAGCTATT GTTCAACCTA AAGAAGCAGC AGCTAGATAT CTCATGTCTG CAGATTGTAG CTTCTTCAAT GATTGGACAG CTGCTTCCGG ATCTGCAAAT CTTGGTCAGG CTGCTAGATC ACTTCATCCG CTAAGCACCG AAAAGCATGA TGTAAATTAC TTCTACAATG ATCCTGTTCA AACTATGGAT CATTCAATGA AGACTGGCGA TCAAAGAACT TCAACAGCTT CCCTGACAAT GGCGCATAAA GATAATGGTG CTCTTGGGCT GTTAGCTTCA GCATATGGAG ACTCTTCTGA TTCCGAGGAA GAAGGTCAAA AAGGCTTAGA TGTCCCTACT TCCGAAGGGG AAACGAAAAA GTATGATCAA GAAGATGCAG ATGGCAATGA GGAGGCTAGA GATGGTCGAA CTTCTGATTT TAACAGCCAG AGACTTACCA GCGAACAGAA TAGGTTAAGC AAAGGCGGAA ATTCATCACT TCTGGAAATA GCTTTACCAT TTATTCCAAG ATCTGATGAT GATTCATGTC GGTTGCACGT GTTTTGTCTT GAGCATGCTG CGGAAGTGGA ACAACAACTT CGTCCTTTTG GGGGGATTCA CATAATGCTA CTATGCCATC CAGAGTACCC CAGGATAGAG GCTGAAGCAA AGATAGTTGC CGAAGAGCTC GTCATAAATC ACGAATGGAA TGATACTGAA TTCAGGAATG TGACCCGAGA GGATGAGGAA ACGATTCAGG CAGCCTTGGA TAATGTTGAA GCTAAGGGTG GGAACAGTGA TTGGACTGTA AAATTGGGTA TTAACCTTTC TTACAGCGCT ATTCTCAGTC GCTCTCCTCT GTACAGTAAG CAGATGCCGT ACAACTCCGT CATATACAAT GCATTCGGTC GCAGCTCTCC ATCAACAAGC TCACCCTTGA AACCCGAAGT CTCTGGTAAA AGATCTTCCA GACAGAGGAA ATATGTTGTT GGAAAATGGT GTGGTAAGGT TTGGATGTCG CATCAGGTGC ATCCCTTTTT GCTGGAGCAG GACTTAGAGG GGGAAGAATC TGAAAGGAAT TGTCATCTGC GAGGTGCTCT GGTTGAGGAT GTCACTAGAA CGGGATTGTT TCCTTGTAAT GTCTCTAGAG ATGCAACTAC AATGTTTGGA AGAAAGTATT GTAGGAAGAG AAAGGTCAGG GCAAAGGCTG TGCCACGCAA GAAGCTGACT TCTTTTAAGA GGGAAGATGG AGTTTCTGAT GACACATCAG AAGATCATTC TTATAAGCAG CAATGGAGGG CTTCCGGGAA TGAGGAAGAG TCTTATTTTG AGACAGGGAA TACAGTTTCT GGTGATTCGT CAAATCAAAT GTCTGATCAG CAGCTCAAGG GAATTCGTCG ACACAGGGGT GTCAAAGAAT TTGAGTCGGA TGATGAGGTT TCAGACCGTT CACTTGGGGA AGAATATACT GTAAGGGGAT GTGCAGCTTC AGAGAGCTCA ATGGAGAATG GCTTTCAGCA GTCAATGTAT GATGATGATG ATGATGATGA TGATATCGAC AGGCACCCTA GGGGAATTCC AAGGAGCGAA CGGATTACAG TTTTTAGGAA TCCAGTTTCA TATGATTCAG AAGAAAATGG CATTTATCAT CAGAGAGGAA GAGTATCCCG AAGTAATAGG CAAGCTAATC GAATGGGTGG TGAATATGAT TCAGAAGAGA ATTCTTTGGA GGAACAAGAC TTTTGCAGTA CAGGGAAAAG GCAAACCAGG TCCACAGCCA AACGAAAAGT TAAAATCGAG ACAGTTCGGA GTCCGAGAGA CACAAAAGGT CGCACTTTGC AAGAATTTGC ATCTGGAAAG AAGAATGAAG AATTGGATTC ATACATGGAG GGACCTAGCA CACGGCTTAG GGTGAGAAAC CTGAAGCCAT TGAGAGCGGC TTCAGAAACA AAACCAAAGA AGATTGGTAA GAAGAGAAGT GGTAATGCTT CCTTCTCCAG AGTTGCAACT GAAGAAGATG TGGAGGAAGA TGAAGAAGCA GAGAATGAGG AAGAGGAATG TGCGGCGTAC CAATGTGACA TGGAGGGTTG CACAATGAGT TTCAGTTCAG AAAAACAGTT GACATTGCAT AAAAGAAACA TCTGCCCTGT TAAAGGCTGT GGTAAAAACT TCTTCTCACA CAAGTATTTG GTTCAACACC AGCGAGTTCA CTCAGACGAC CGTCCTCTGA AATGTCCATG GAAAGGCTGT AAGATGACGT TCAAGTGGGC TTGGTCTAGA ACCGAGCACA TAAGGGTTCA CACAGGCGCT AGGCCTTATG TTTGCGCTGA ACCAGGTTGT GGTCAGACAT TCCGGTTTGT CTCAGATTTT AGCCGGCATA AAAGGAAGAC AGGTCATTCG GTAAAGAAGA CCAAGAAAAG GTAATTTAGG CTCTAACATT GGAATCTTTC ATGAAGAGAT TACTCCATTG ATCTATTAGA AGAAAATTGG ATTGTAGGGA TTTTAGGGGT TTTCTAAGTG TGTATGTCTC TCTGGTCCTT TGTCTATTTG GGATTATTAT TCAGTCAAAA GTCTTAACAT TTGGAAGAGC CATTGTTTGT TGCAGCATTT TCACTTTCAG ACAGATTATC TCTTTGTTGT ACTATTGTCT ACTTTGCAAT TGAATGAATC TGTAGCAAAT CCTGGTGTAG GAAAAGTATT GTGTCACT |
| Length | 4358 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 13129043.. 13134225 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G48430.1 |
| Description | relative of early flowering 6 |
| TAIR curator summary | Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. |
| Alias | [JMJ12][REF6][Jumonji domain-containing protein 12][relative of early flowering 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5 |
Ahg913250 | somatic embryogenesis receptor-like kinase 2 |
| 5.56776 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
| 11.0905 |
Ahg488740 | GTP1/OBG family protein |
| 13.4907 |
Ahg923418 | Protein of unknown function (DUF620) |
| 16.1864 |
Ahg488148 | ARF GTPase-activating protein |
| 18.9737 |
Ahg487140 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| 22.2486 |
Ahg480852 | F-box and associated interaction domains-containing protein |
| 23.6432 |
Ahg480906 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 26.8328 |
Ahg896803 | |
| 30.9839 |
Ahg488003 | Thioredoxin superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|