| Annotation |
|---|
| Description | jgi|Araly1|487204|fgenesh2_kg.6__338__AT5G04240.1 |
| Sequence |
ATGGGTAATG TTGAAATTCC GAATTGGCTT AAAGCTTTGC CATTGGCACC TGTGTTTAGA CCTACAGACA CTGAATTTGC AGATCCCATT GCGTATATAT CGAAAATCGA GAAGGAAGCT AGTGCTTTTG GGATTTGCAA GATCATTCCT CCTTTACCCA AGCCATCCAA AAAGTATGTT TTCTATAACT TGAACAAGTC TCTTTTGAAG TGTCCGGAGT TGGTTTCGGA TGTTGACATT TCCAAGGTGT GTAAAGAGGA CAGAGCTGTA TTCACCACTA GGCAGCAAGA GTTAGGCCAG ACTGTGAAAA AAACGAAAGG AGAGAAGAGT AAGAGTAATT CTCAAAGGAG TGGTGTTAAG CAGGTTTGGC AAAGTGGAGG CGTATATACA TTGGAGCAGT TTGAAACTAA GTCGAGAACT TTCTACAAAA GCCAATTAGG GACGATTAAA GAAGTGTCAC CAGTTGCCAT TGAGGCATTG TTCTGGAAAA CGGCTTCAGA TAAGCCTATA TACATAGAGT ATGCTAATGA TGTGCCTGGC TCTGCTTTCG GTGAGCCAGA TGGTCATTTC AGGCATTTCC GGCAGAGGAA GAGGAGGGGC AGGGGATTTT ATCAGAGGAA GACAGAAATC AATGACCCAT CAGGTAAGAG CGGTGAAAAC TCATCCCCTG AGGTAGAAAA GGCACCCCTT GCTTCTACAA GTTTATCATC TCAGGATTCG TCCAAGCAGA AGAACGTGGA TATTGTTGAT GAAATGGAAG GCACTGCAGG CTGGAAGCTC TCCAACAGTT CGTGGAACCT TCAGACGATT GCACGTTCAC CTGGTTCTGT TACACGTTTC ATGCCAGATG ACATCCCTGG TGTCACATCT CCCATGGTTT ATATCGGTAT GTTGTTCAGC TGGTTTGCCT GGCACGTTGA GGATCATGAG CTTCACAGTA TGAATTATCT TCACACTGGC TCACCAAAGA CTTGGTACGC TGTCCCTTGT GATTATGCGC TTGACTTTGA AGAGATTATC CGCAAAAATT CTTGTGGCAG AAACATTGAC CAATTGGCTG CTCTCACCCA ACTAGGCGAA AAGACAACTC TTGTATCACC TGAGATGATA GTTGCATCTG GCATTCCCTG CTGTAGGTTG GTACAAAATC CTGGTGAATT TGTTGTGACT TTTCCGAGGT CTTATCATGT AGGATTCAGC CACGGTTTTA ACTGTGGGGA AGCCGCTAAT TTTGGAACCC CACAGTGGCT CAACGTAGCT AAGGAAGCTG CTGTGCGTCG GGCAGCCATG AATTATCTAC CCATGCTGTC CCATCAGCAG CTGCTATATC TCTTGACCAT GTCATTTGTT TCAAGAGTGC CACGATCATT GCTACCAGGT GGTCGTAGCT CCCGACTGAG AGATCGGCAG AGAGAAGAAA GAGAGTTCCT TGTGAAAAGA GCTTTTGTAG AAGATATATT GAACGAAAAC AAGAATTTAT CTGTTCTTCT TCGAGAACCA GGCTCTCGTT TGGTGATGTG GGACCCTGAT TTACTTCCGC GTCATAACGC AGTGGCTCTT GCAGCTGCTG CTGCTTCTGC TGTTTCACCT CCAGCAGTGG CAACAAATGA ACTTGAGGAG GGTCATTCTG AATTGCAGAA TAAAGAGAAG ACGACTCTTT TAGAGGAATT GAGCTTGTTC ATGGAGAAGC TGAATGATGT ATACTACGAC GATGATGATG GTCTGCTTAA CGATTTCCAA GTTGATTCTG GAACCTTGCC ATGTGTGGCG TGTGGCGTTC TTGGCTTCCC CTTTATGTCT GTGGTCCAGC CTTCAGAAAA AGCATTAAAA GATCTCCCAG AGAGACAAGG AGATACAGAT GCTCAGGAAA TTACGACACT GTCATCAGAA AAGTCTGACT GCGAATGGAA AACGTCTTCT AGATATATAA GACCTCACAT TTTCTGCCTT GAACACACTA TTGAACTTCA GAGACTGCTG CAACCCAGAG GTGGACTGAA GTTCCTTGTA ATTTGCCAGA AAGACTTTCA AAAATTTAAG GCACATGCGG CTATAGTGGC AGAGGAGGTC AAAGTCCCTT TCAGCTATGA TGATGTCCTG TTAGAGAGTG CATCTCAGGA AGAGTTGAGT CTAATTGATC TTGCAATTGA AGATGAAGAA AACTACGAAC ACGGTGTAGA CTGGACCTCA GAACTTGGCA TCAATTTACG GTACTGTGTT AAAGTGAGGA AAAATTCCCC TACTAAGAAA ATTCAGCATG CACTGTCACT AGGTGGCTTG TTCTCCGATA CAAGCCAGAT GCTAGATATT TCAACTATGA GATGGCTGCA GAGAAAATCA CGCTCAAAAG CTAAACCCAT TTCTACCTCA AGTTTCACAC CTCGTGAACA TCTTGAAGTA AAAGCAGATG GAAAATTAAG GGATAATATG GATTCTCAGG CCGGAAAAAA GGAAGAAAAG ATCATCCAGT ACTCTAGAAA GAAAAAGTTG AATCCAAAGC CTTCTGCAGA ACAAGGTCAG GAGCTAGCTA CCCTAGCTAA ATCAAAAGAT TTTGATAAGA CATGCAATAA ATTTACCAAT AGGTCACATC TGGATAGTGC AATTCGTTCT GAGATGAACA GTGAGATTGG AGACTCTGGA AGGGTCATTG GGGTATCATT TTCCATAAAT CCTTGTAGCT CATCTTTCAC TGTGGGACAT GGGCAAGAAC ATCCCGAGAT CACTGTCAAG TTTGGTTCAG CTTTAGATGG GAATGTCACA AATAGTTCCA GTATGGGGAA TACAGACTCT GCTGACCTAA CCTTAACCTC CATATCTAGA GAGCGCCAAG GACACTCTTT GACCAGCAAC AATAATGGCT CCAACTCAGG TAGTCATGTT GTGGCAAGCC AGACCATACT TGCTTCTACA GATAATAATC ATGGTGGACC AAGAAAATTG TCTGGTGATT ATGTCTGCAG TGATGTGTCT GTACGTGGTA TTCAGGAAGC GGTTGAAATG AGTGACCAAG AGTTTGGAGA ACCTAGGTCT ACTGTCACTA ATATCGAGGA TGAACAGCAA TCAAAGATGG TGCAACCAAC CAAAAGAGAA GCTGTATCTG GTGATGACGC ACAGGTGGAG GGAGCAGAAG CTGCGTGTAC CATAGAAAAC TTGTGCTCTG AAATTATTCT GCACACTGAG CATTCTTCAG CTCAAGTGGG TATGGAAATT CCTGAAATAA ACACGGCCAG TGAGAACATA GTTGTTGACA TGACCCATGA TGGTGAACCT TTGGAAAGTA GCGATATATT AAGTTCGAGC AACGGTGATC AAGCTTCTTC AAATGGATTG CAAGTTCTAG ATGATGAGCT TAGCATGGAG AGCGAAGTTT CAAGCTCAGA AAACACTGAG GTTATCGAGG CTCCCAATTC TATGGAAGAA GCAAAGAAGA AGCGGAAAAT AGAATCAGAG TCTGAGACAA ATGATAATCT AGAGAGTAGC ATTGGTTTCA TAAGGAGTCC TTGTGAAGGG TTGAGGTCAA GGGGCAAGAG GAAAGAAACA TGTGAAACTT CATTAAAGCT CACTGAAATG AGTGATGAAG AGAGGAAACC TATTGAGAAA AGGCTCAAAA AAACTCCAAA GGCTTGCTCA GGGAGTCGTC ACCAAGAAGT CCCCGCGACA ACTCACCCCA ACCGATGTTA CCTAGAGGGA TGCAAGATGA CTTTCGAGAG CAAAGCGAAA TTACAAGCTC ACAAGAGAAA CTGTTGCACT CACGAAGGGT GTGGAAAGAA ATTCAGGGCT CACAAATATC TGGTGCTTCA TCAACGTGTT CATAACGATG AAAGACCTTT CGAGTGCTCT TGGAAAGGGT GTTCCATGAC TTTCAAATGG AAATGGGCGA GGACAGAGCA TTTGCGTCTG CACACAGGAG AACGACCATA CAAATGCAAG GTGGATGGAT GCGGATTGTC GTTTAGGTTT GTATCGGATT ATAGTCGCCA CAGACGGAAA ACCCTGCACT ATGTCACATA GAACGGCACT GAATGCTGCA AAATGGTGGC TGGAGAAAGT GAAAGGGCCT CTCTCTGGAA TTGAGAGTTG TTGTAAGATC TAATATCTGG TTGGTTTTTT TAGTTGTTGT CTAGTGTTTT AGACCGTTGT TATGTCTCTT TTTGTAGTAG ATGTGACTTC TTTCCACTTT TGAGAACGAC TCACTCACAC TCTTGTTTGC TTTGACTGTT AAACTCGTAA CCATTGGATT CAAAATGTT |
| Length | 4249 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 1323171.. 1328505 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G04240.1 |
| Description | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein |
| TAIR curator summary | Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. |
| Alias | [ELF6][EARLY FLOWERING 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.93725 |
Ahg495654 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 10.8167 |
Ahg318738 | |
| 27.9285 |
Ahg943674 | transducin family protein / WD-40 repeat family protein |
| 30.2985 |
Ahg496670 | beta-D-xylosidase 4 |
| 37.55 |
Ahg940356 | DDT domain-containing protein |
| 39.975 |
Ahg476621 | plastid transcriptionally active 2 |
| 45.7493 |
Ahg471018 | |
| 48.1352 |
Ahg347545 | |
| 48.4665 |
Ahg908375 | UDP-Glycosyltransferase / trehalose-phosphatase family protein |
| 50.9804 |
Ahg493218 | Protein phosphatase 2C family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|