| Annotation |
|---|
| Description | jgi|Araly1|488249|fgenesh2_kg.6__1383__AT5G14170.1 |
| Sequence |
CAGGCTGATA GGTTTATATA GCAATGTCGG GTAACAACAA CAATCCACAA AAGCCTCAAG GCTCTGCGCC TTCGCCTTTT GGTAATCCTG GGATGGCCTC TGCATCTGTT CCTGGAAACC AAGGCTTTGC TCAGTCTCAA ATGGCAGCTA ACTTTCAAGC TCAGTTTCAG TTCTCACAAG CTCAAGCCCT AGCCCATGCT CAAGCACAGT CTAAAGTTCA AGCACAACTG CAAGCTCAGT TACAAGCTCA AGGCATGACG ATGAATCAAG CACAAGGTTC CCCTGGGATT GCTGGGTTGG GTCCTTCTTC TCCTTCTTTG ACGACTCCTG GAAGTTTAAA CATGAAGAGG TTTCAGCAGA AACCGCCGAT GCGACCTCCT GGTGCTCCTG CGAGTAACAA TACTATCTCC CCCATGAGAA CAATGGAGTT AACTCCTGCT GCGCGGAAAA AGAAACAGAA GCTTCCAGAA AAGTCGTTGC AGGAGCGGGT GGCTGCAATC TTGCCAGAGT CTGCCTTATA CACACAACTT CTGGAGTTTG AGTCTCGTGT CGATGCTGCA TTAACTAGAA AGAAAGTTGA CATCCAGGAA GCCCTTAAAA ACCCTCCCTG CATACAGAAG ACTCTTAGGA TCTACGTTTT CAACTCGTTT GCTAACCAAA ACAACACGAT CCCTGGGAAT CCTAACGCTG ACCCGCCAAC ATGGACTCTT AAAATTATTG GTAGGATCCT GGAAGATGGG GTGGATCCCG ACCAGCCAGG ATTTGTTCAG AAAGCAAACC CATTGCATCC CAAATTCTCA TCTTTCTTCA AAAGGGTTAC AGTTTCCCTG GATCAGAGGC TGTACCCTGA GAACCCATTG ATCATATGGG AGAATGCTCG ATCACCTGCT CCTCAGGAAG GGTTTGAGAT AAAGAGGAAA GGGAATCAGG AGTTTGCAGC TAGTATACGG TTGGAGATGA ACTACGTCCC TGAAAAGTTT AAGCTTTCTA CTGCATTGAT GGATGTTCTT GGGATTGAGG TTGAAACCCG CCCAAGAATC ATCGCTGCAA TTTGGCATTA CGTTAAGGCG AGGAAATTGC AGAACCCAAA TGACCCCTCT TTCTTCAACT GTGATGCTGC ACTTCAGAAA GTTTTTGGGG AAGAAAAGTT GAAATTCACT ATGGTCTCTC AGAAAATATC TCATCACTTG TCGCCTCCAC CACCTATTCA CTTGGAACAC AAAATCAAGC TCTCAGGAAA TAATCCGGCC GTATCGGCAT GCTATGATGT GCTAGTGGAC GTACCCTTCC CGATCCAAAG GGATCTGAAC AATTTGCTAG CCAACGCAGA GAAGAACAAA GAGATTGAGG CTTGTGATGA AGCAATATGT GCAGCCATAA GGAAAATCCA TGAGCATAGG AGGAGGCGGG CATTTTTCTT GGGGTTCAGC CAATCGCCAG TTGAATTCAT AAACGCCCTG ATCGAATCTC AGAGCAAGGA TCTGAAGGTT GTAGCGGGAG AAGCCAGTCG AAATGCTGAG AGGGAACGTC GATCGGACTT CTTCAACCAA CCTTGGGTCG AAGATGCAGT TATACGTTAC TTGAACCGGA GGCCAGCAGC TGGGAACGAT GGGCCAGGGA GTTGGTGAGT TTCTTGATAC AAGTCTCTTC ATCTGTTTGA GCATTTTTAG AAGAAGATAT TGTTGAGATC AGTCTGGTTT AAAAGGGACC TAGTGTATCT GTAATCTTGT GTATGTTGAA ACATTATGAC TTTATATAAT TAGCTTTGTT TTGTAGCCTT TGCTTTAATG GTTAAGTC |
| Length | 1798 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5515761.. 5517666 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G14170.1 |
| Description | SWIB/MDM2 domain superfamily protein |
| TAIR curator summary | CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates. |
| Alias | [CHC1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg934591 | SCAR homolog 2 |
| 3.16228 |
Ahg479745 | Eukaryotic rpb5 RNA polymerase subunit family protein |
| 3.74166 |
Ahg334100 | lactoylglutathione lyase family protein / glyoxalase I family protein |
| 4.24264 |
Ahg931513 | Basic-leucine zipper (bZIP) transcription factor family protein |
| 4.47214 |
Ahg478494 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 6.48074 |
Ahg481012 | SUMO-activating enzyme 2 |
| 7.34847 |
Ahg934879 | Protein kinase family protein with ARM repeat domain |
| 7.48331 |
Ahg920619 | ubiquitin-specific protease 15 |
| 8.30662 |
Ahg492527 | Adaptin family protein |
| 8.48528 |
Ahg895977 | RNA polymerase II transcription mediators |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|