Detail



ID : Ahg488960

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488960|fgenesh2_kg.6__2094__AT5G20570.1
Sequence
TCTCTCCACA ACAAACCAAG CGAGAGCTCA AACTTTGAGA TTTTTCTTCG GCTTTTCTAG GGTTTTAATT TTCCTTCCGA TCAGAGATTA ATGGCGAATC TGGACTCCGA CGTTACCATG ATTCCTGCCG GAGAAGCCTC CAGCAGCGTA GCCGCTTCGT CTTCCAACAA GAAAGCTAAG CGATTCGAGA TTAAAAAGTG GAGCGCCGTT GCTCTCTGGG CTTGGGATAT CGTTGTTGAC AACTGTGCGA TCTGCAGAAA CCACATCATG GATCTGTGCA TTGAATGTCA AGCTAATCAG GCCAGCGCTA CAAGTGAGGA ATGCACTGTT GCTTGGGGGG TTTGTAATCA CGCCTTCCAC TTTCACTGCA TCAGCAGATG GTTAAAGACT CGTCAAGTTT GTCCATTGGA TAACAGTGAG TGGGAGTTTC AGAAATATGG TCACTAAATC AACAAATGGT TCCAGCAAAC ATGTGTCTAA TCGTGAAGAT ATCAGGTTCA TTTGGTTACC ACCGCATATG ATAACTAAAG ATTGTTCAAG TTTTGCTTCT TTTTTTTTTT TTTTGTACTG TATTTCTCAA ATTGTGGGAA CGGAGGTTTA CTGTTCACTG AACCTATTAT CGTTGTGCTT TGGCCTTTGG GTGACGTCTT TGATTTTAAA A 
Length661
Protein Sequence
Protein Residue
Map Locationscaffold_6: 8294969.. 8296580
Download Sequence
A.thaliana
AGI-codeAT5G20570.2
DescriptionRING-box 1
TAIR curator summaryEncodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.
Alias[ATRBX1][HRT1][RBX1][ROC1][RING-BOX 1][RING-box 1][REGULATOR OF CULLINS-1]
Gene coexpression
MR
MR Locus Description
7.74597 Ahg474808 20S proteasome beta subunit G1
9.8995 Ahg491398
13.3041 Ahg925800 calmodulin 4
17.4356 Ahg489219 Transmembrane CLPTM1 family protein
22.2486 Ahg494098
26.7955 Ahg488536 SART-1 family
27.3496 Ahg476840 eukaryotic translation initiation factor 2 (eIF-2) family protein
27.9285 Ahg475948 Adenine nucleotide alpha hydrolases-like superfamily protein
29.7489 Ahg344464 Structural maintenance of chromosomes (SMC) family protein
36.8511 Ahg486786 NAD(P)-binding Rossmann-fold superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression