| Annotation |
|---|
| Description | jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1 |
| Sequence |
AAAAAATAAA GCAAATGGTT TTATGATCCG ATTCCTTCTC AATCTCACGG AGGGGAAAAG ATTCCAATTC AAATCTCTAT CTCTCAACTT TCAATTTCTG AGAGAGTCGG AAAAATTCTC CAGATCTCCT CGCTAAATTC GTTTTCCGAT TCGGCCTAGC GACGGCGAGA GAGAGAGGAG AGAGGAAGAG GCAAGTTGAT TGACCGGAGA AGAAGACGGA AAAAATGATA ACGATCCCTT ATCTAACCGC TGTATCGACC TACTTCAGCT ACGGATTGCT CTTTGCTTTT GGCCAGCTCC GTGATTTCTT CCGCCGCTTC ATTGATTGGT GGCTCACTAG CAATCTCCAG GGATACGCGC CGATCTGTTT GGGGCATGAG GATTTTTATA TTAGGCGATT GTATCATCGG ATTCAGGATT GTTTTGAACG ACCTATATCG AGTGCACCTG ATGCTTGGTT TGATGTCGTC GAGCGTTACT CTAATGATAA CAACAAGACG CTTAAGCGAA CAACAAAGAC TAGCAGGTGC CTCAATTTGG GGTCCTACAA TTATCTTGGG TTTGGTTCTT TTGATGAATA TTGCACGCCT CGTGTTATTG AGTCCTTGAA GAAATTTTCA GCAAGTACAT GTAGCTCTCG TGTCGATGCA GGAACTACAT CAGTGCATGC AGAACTTGAG GAATGTGTTA CTAGGTTTGT TGGAAAGCCT GCTGCTGTTG TTTTTGGCAT GGGCTATGCA ACAAACTCAG CTATCATTCC AGTCCTGATT GGAAAGGGAG GGTTGATAAT AAGTGATTCC TTGAACCATA GTTCGATTGT CAATGGTGCT CGAGGTTCAG GAGCCACTAT CCGTGTTTTC CAGCATAACA CACCTTCCCA TTTGGAACGA GTTTTGAGAG AACAAATTGC AGAAGGTCAA CCTAGGACAC ATCGACCATG GAAGAAAATT ATTGTTGTTG TTGAAGGTAT TTACAGCATG GAAGGGGAGA TTTGTCATCT GCCCGAAGTT GTCGCCATAT GCAAGAAGTA TAAGGCATAT GTTTACTTGG ATGAGGCTCA CAGCATTGGG GCAATTGGTG AAACAGGAAA GGGTATCTGT GAACTCCTGG GAGTTGACAC AGCTGATGTG GACGTAATGA TGGGAACCTT CACAAAATCT TTTGGGTCTT GTGGTGGCTA TATTGCTGGA TCTAAGGAGC TCATCCAATA TTTGAAGCAT CAATGCCCGG CTCACCTTTA CGCAACATCC ATACCAACTC CTTCCGCACA ACAAATCATT TCTGCCATTA AAGTTATTCT GGGAGAGGAT GGTTCAAACC GAGGAGCACA AAAGCTGGCA AGAATACGTG AGAACAGCAA CTTTTTCCGG GCAGAGCTGC AGAAGATGGG ATTTGAGGTA CTTGGAGACA ATGATTCCCC AGTCATGCCA ATAATGCTAT ACAACCCAGC AAAAATCCCA GCTTTCTCAA GAGAATGTCT GCGACAAAAA GTGGCAGTGG TGGTCGTGGG TTTCCCAGCT ACACCTCTAC TGCTGGCTAG GGCACGTATT TGCATTTCCG CATCTCATTC AAGAGAAGAT CTTATAAGAG CCCTCAAGGT TATAAGCAAA GTAGGTGACC TTAGCGGAAT CAAATATTTC CCGGCAGAGC CGAGGAAGAT AGAACAGTCA AAAAATGACA TCAAGTTGGA TTGAAGACTA AACAAATGAA ATAAAAGATG CATCCAGGAA AACGCAAGCA AATGCAGTTT TAAGTGTTAA CTTCGGCTTC ACACACAAAT CTGATTTCTC AGGAGTCAAG TCATTTCCTC TCTAAGTAAA TCCCAACCCA GAGTTAGTCC ACCTTTCCTG AAGTCTTGCT TACGATGATG CTACTGCATT TATGTGATTC TTCTTCCATG TTTTT |
| Length | 1905 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9637185.. 9640610 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23670.1 |
| Description | long chain base2 |
| TAIR curator summary | Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. |
| Alias | [LCB2][long chain base2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.0454 |
Ahg476621 | plastid transcriptionally active 2 |
| 12.2474 |
Ahg935936 | Major facilitator superfamily protein |
| 13.5647 |
Ahg352054 | Uncharacterised conserved protein UCP009193 |
| 13.7477 |
Ahg919385 | Protein kinase superfamily protein |
| 17.3205 |
Ahg337919 | Homeodomain-like superfamily protein |
| 19.5959 |
Ahg472300 | DNA-binding bromodomain-containing protein |
| 19.799 |
Ahg482441 | maternal effect embryo arrest 22 |
| 20.4939 |
Ahg907940 | ARM repeat superfamily protein |
| 22.8473 |
Ahg485358 | casein kinase II, alpha chain 2 |
| 24.3721 |
Ahg909946 | beta glucosidase 11 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|