Detail



ID : Ahg489650

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|489650|fgenesh2_kg.6__2784__AT5G28490.1
Sequence
TTTTCCAAAA TCAAGAACAA GGAAAAAAAC CATGGATTTG ATCTCTCACC AACCAAACAA GAACCCTAAT TCCTCAACAC AATTAACACC ACCTTCCTCA AGCCGGTACG AGAACCAGAA ACGCCGTGAC TGGAACACTT TCTGTCAATA CCTCAGGAAC CACCGTCCTC CGCTCTCTCT CCCGTCGTGT AGCGGCGCAC ACGTGCTCGA GTTCCTCCGC TACCTCGACC AGTTCGGAAA AACAAAAGTT CACCACCAGA ACTGTGCCTT CTTCGGCCTC CCCAACCCTC CTGCTCCTTG TCCTTGCCCT CTCCGGCAAG CTTGGGGATC ACTCGACGCT CTCATCGGCC GCCTCCGCGC CGCCTACGAG GAGAACGGTG GCCCTCCTGA AGCTAACCCA TTTGGCTCAC GCGCCGTCAG GTTATTCCTC CGTGAAGTCA GAGACTTTCA AGCCAAAGCT CGTGGTGTTA GCTATGAGAA GAAGAGGAAG AGAGTCAATA GACAGAAACT GCAAACGCAG CCGCCTCTAC CGCTTCAGCA ACAACAGCAG CAGCAGCAGC CTCAACAAGG TCAGTCTTTG ATGGCTAATT ACTCGGGTGC AACAGTATGA TCATATTTAT ATAATTTCCC CTTTTTACTA TATGTATTGT CTCTTATTTG CTTTATCTAA GTTTTTAATG TAATATCTTC TTTTACATTA TCCACTGATG CTTTTGTTTC TGTACTAGTT GTTTATGAAT AAGATAAACT ACGATTATTT 
Length760
Protein Sequence
Protein Residue
Map Locationscaffold_6: 12930096.. 12930855
Download Sequence
A.thaliana
AGI-codeAT5G28490.1
DescriptionProtein of unknown function (DUF640)
TAIR curator summaryEncodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.
Alias[LSH1][OBO2][LIGHT-DEPENDENT SHORT HYPOCOTYLS 1][ORGAN BOUNDARY 2]
Gene coexpression
MR
MR Locus Description
1 Ahg333544 IQ-domain 18
7.34847 Ahg471358 Vacuolar calcium-binding protein-related
24 Ahg483610
29.2916 Ahg485213
30 Ahg950003
30 Ahg940570 Plant protein of unknown function (DUF868)
30.5941 Ahg482334 squamosa promoter binding protein-like 3
33.1813 Ahg470222 beta-xylosidase 2
33.9411 Ahg473401 alpha/beta-Hydrolases superfamily protein
38.0657 Ahg904498
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression