Detail



ID : Ahg482334

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|482334|fgenesh2_kg.4__1394__AT2G33810.1
Sequence
ATAAACCCGG GTGGTGACAT AGCATCGACA GTAACTTAAA CTGGGTCCTC GTCAGGTTTT AAGGATACAT ATGTATTCAT GTATGCATAT ACAAAATAAT AGAGCACTAA AGCTTGTTCG TACTTTTTTT TACAGAACAT GCTAATAATT TTTATACCTT AGGAGTGAAA ATTTAGTGGT CCAACAACTT AAGCACCTAA GATCCTTCCC CACTTTTGTT TGGGGCTCCT TTATATCTCT TCCAATGTTT ACTTGTACTT CCTCTTCGTC TTCTTCTCTT CTTGTTCCCT CTTTCATGTG AGAGAGAGAG AGAGTTGAAA TTTGCAGATG AGTATGAGAA GAAGCAAAGC GGAAGGTAAG AGGAGTTTAC AAGAAATGAG TGAGGAAGAG GAGGACGAAG AAACAGAAGA TGAAGATACT TTTGAAGAAG AAGAGGCTTT GGAGAAGAAG CAGAAAGCTA AAGCTACAAG TAGTAGTGGA GTTTGTCAGG TCGAGAGTTG TACCGCGGAT ATGAGCAAGG CCAAACAGTA CCACAAACGA CATAAAGTCT GCGAGTTTCA TGCCAAAGCT CCTCTTGTTC GGATCTATGG TCTTCACCAA CGTTTCTGCC AACAATGCAG CAGGTTTCAC GAGCTCAGTG AGTTTGATGA AGCCAAGCGG AGTTGCAGGA GACGCTTAGC TGGACACAAC GAGAGAAGGC GGAAAAGCAC AACTGAATAA AGACGGTGAA AGGTGTGAGA TCCCAATTTG AAGGTTAATG AAACAGGCTT TGCTTACTCT CTTCTGTCAG TCTCTTTTAG CTCCTTGTAA TCCTCTGTGT ATCCTCTCTT TCCATATTAC CTGCAATCAA AGCTATCTGC TAAACCTATG ACATGATTAA ATAAATGCAT TAAGACTTGA TAAATGGTTC AAGGAATATG TGTAAGACTG TTTAAACTTG GAAAATGTTA TTTCAAGCC 
Length959
Protein Sequence
Protein Residue
Map Locationscaffold_4: 15220343.. 15221313
Download Sequence
A.thaliana
AGI-codeAT2G33810.1
Descriptionsquamosa promoter binding protein-like 3
TAIR curator summaryEncodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Alias[SPL3][squamosa promoter binding protein-like 3]
Gene coexpression
MR
MR Locus Description
6.9282 Ahg932396 Leucine-rich repeat protein kinase family protein
8.48528 Ahg492389 AGAMOUS-like 24
14.1067 Ahg476013 SOB five-like 2
17.0294 Ahg941765 Stress responsive A/B Barrel Domain
18.5742 Ahg471358 Vacuolar calcium-binding protein-related
19.7484 Ahg473698
22.4944 Ahg950003
27.2029 Ahg478940
30.3974 Ahg483019 Subtilisin-like serine endopeptidase family protein
30.5941 Ahg489650 Protein of unknown function (DUF640)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression