| Annotation |
|---|
| Description | jgi|Araly1|490126|fgenesh2_kg.6__3260__AT4G04920.1 |
| Sequence |
ATGAATCAGC AACACCCAGA AGAAGTTTCT TTGGGTGGAG GAAACATTGA AGCTCCAGCT ACAGTGGAGG AGGAAAAAGA ACAAGTACAG CATAAGCAGG AAGAGACTGA GTCTACGAAT CCAATTGTCG TCGTCGCGGA GGAGAAATCA GCAGACGGAG AGAAAGAAGA CGATAATACT AGTACTAGTA ACATGGAGAT TGATCCTGTG AGTCCGGCTA CTGTTTTCTG TGTTAAGCTT AAGCAACCCA ATTCCAATTT GCTTCATAAG ATGAGTGTTC CTGATTTGTG CCGTAACTTC AGTGCTGTTG CGTGGTGTGG TAAATTGAAT GCTATTGCTT GTGCTTCCGA GACCTGTGCC AGGATTCCAA GCTCCAAGGC CAATACACCT TTTTGGATCC CAATACATAT CTTGATACCT GAGCGCCCAA CTGAGTGTGC AGTGTTTAAT GTTGTGGCAG ATTCTCCTCG TGATTCTGTC CAATTTATCG AATGGTCTCC CACTTCTTGT CCTCGCGCGT TACTCATTGC TAATTTTCAT GGACGGATAA CTATCTGGAC GCAGCCTACT CAGGGTTCGG CTAATCTAGT GCACGATGCT ACCTCCTGGC AGTGTGAGCA TGAATGGCGT CAGGACATTG CTGTTGTTAC AAAGTGGCTG GCGGGGGCTT CTCCATATAG GTGGTTGTCC TCCAAGCCAA GTTCTGGTAC GAATGCAAAG TCAACTTTCG AGGAGAAATT TCTCTCGCAG AGCTCTGAAA GCTCAGCTCG GTGGCCCAAC TTTCTCTGTG TGTGCTCTGT TTTCTCATCC GGCTCTGTTC AACTTCATTG GTCTCAGTGG CCTTCTAACC AGGGAGGCAC TGCACCAAAG TGGTTTAGTA CAAAGAAAGG TCTTTTAGGT GCAGGGCCCA GTGGAATTAT GGCTGCTGAT GCTATTATAA CGGACAGTGG TGCCATGCAT GTTGCAGGAG TTCCTATTGT AAACCCTTCA ACAATTGTAG TATGGGAGGT GACCCCTGGC CCTGGAAATG GACTCCAGGC GACTCCAAAA ATCTCTACAG GCAGTCGTGT GCCACCATCC CTTAGTTCTT CTTCTTGGAC AGGCTTTGCT CCTTTAGCTG CTTACTTGTT CAGCTGGCAA GAGTACTTGA TATCCGAGAT AAAGCAAGGG AAGAAGCCCA CAGATCAAGA TTCCAGTGAT GCTATATCGC TAAGCTGCTC GCCGGTTTCC AATTTTTCTG CTTATGTAAG TCCAGAGGCT GCAGCTCAGT CTGCAGCAAC CACAACATGG GGATCTGGTG TTACTGCTGT TGCTTTTGAT CCAACTCGTG GTGGTTCAGT GATAGCAGTT GTTATAGTTG AAGGGCAGTA CATGTCTCCG TATGATCCAG ATGAAGGTCC TTCAATCACA GGCTGGAGAG TACAGCGCTG GGAATCAAGT GTTCAACCTG TTGTACTGCA TCAGATATTT GGAAACCCAA CTTCAAATTT TGGTGGACAG GTCCCCACGC AAACTGTCTG GGTATCCAGA GTGGATATGA GCATACCACC TACTAAAGAT TTTAAGAATC ATCAAGTAGC TGCAGCAGGA CCAAGTGTGG ATGCACCAAA GGAGCCTGAT TCTGGTGATG AGAAGGCTAA CAAGGTTGTT TTTGATCCTT TTGATTTGCC AAGTGATATT CGTACACTTG CACGGATTGT CTATTCTGCT CATGGTGGTG AAATTGCGAT TGCTTTTCTT CGTGGTGGAG TTCATATCTT TTCTGGTCCA ACATTTTCAC CTGTTGAAAA CTATCAAATA AATGTTGGAT CTGCAATTGC TGCACCCGCA TTTTCTCCAA CAAGCTGTTG TTCGGCTTCT GTATGGCATG ATGCTGCTAA GGACTGCGCA ATGTTGAAAA TTATCCGTGT TCTTCCTCCT GCTCTTCCAC GTAACCAATC AAAGGTTGAT CAATCAACAT GGGAGCGGGC GATTGCTGAG AGATTCTGGT GGAGTCTTTT AGTCGGAGTT GATTGGTGGG ATGCAGTTGG CTGCACACAG AGTGCCGCAG AGGATGGGAT AGTTTCATTG AACAGCGTGA TTGCTGTCAT GGACGCTGAT TTTCACTCCC TTCCTTCAAC ACAGCACAGA CAACAATATG GCCCTAACCT AGATAGGATC AAGTGCCGGT TGCTTGAAGG AACCAATGCT CAAGAGGTTC GTGCCATGGT TTTAGATATG CAAGCAAGGT TGCTGTTGGA CATGCTTGGA AAAGGAATTG AATCAGCTCT TGTGAATCCT TCGGCGTTGG TTTTTGAGCC ATGGCGAGTA GATGGGGAGA CAATAACAGG CATCAATCCG GATGCAATGG CTGTTGATCC TGCTCTTGTT TCCAGTATTC AGGCTTATGT GGATGCTGTT CTTGATCTTG CTTCTCATTT CATCACACGT TTAAGGCGCT ATGCGAGTTT TTGTCGGACT CTTGCGAGCC ATGCTGCTTC TGCTGGAACT GGCAGTAATC GCAATATAGT TCCCAGTCCC ACACAAAATG CATCATCTCC TGCAACACCT CAGGTTTTTC CTGACAAGTC ACTGTATCAT GCAGCAGGCC AACCTACTAC TACTACTACA AACTCCAGTG GAAGCACACA AGCTTGGATG CAGGGTGCCA TAGCGAAAAT TAGTAGCTCG AATGATGGAG TATCCAACAC TACTGCAAAC CCAATCAGTG GTTCACCTAC CTTCATGCCA ATAAGCATCA ATACAGGAAC ATTTCCAGGA ACACCTGCTG TTCGGCTCAT TGGGGACTGT CATTTCCTTC ATCGGTTATG TCAGCTGTTA CTCTTCTGTT TTCTCCAGCG GTCTTCACGA TTTCCCCAGC GAAATGCTGA TGTTAGTTCA CAAAAACTTC AAACGGGGGC TACCAGCAAA TTGGAAGAGG TCAACTCTGC TAAACCAATC CCTCCCTTGA ACAGGATAGA GGAAGCCCAG GGATTCCGGG GTGCCCAGTT GGGTGCTGGA GTGAAAGGGA TTGACGAAAA TTCTGCTCGT ACAACAAAGA TGGGTTCTGG GAATGCCGGT CAAGGATATA CTTATGAGGA GGTGAGAGTT CTTTTCCATA TACTAATGGA TCTCTGCAAG CGAACATCTG GTCTTGCGCA TCCCTTACCT GGCTCTCAGG TAGGTAGTGG AAACATTCAA GTTCGACTGC ATTATATTGA TGGAAATTAC ACAGTGTTGC CCGAGGTGGT AGAAGCAGCT CTTGGACCAC ATATGCAGAA CATGCCTCGC CCAAGAGGAG CTGATGCTGC TGGTCTTCTA CTTCGGGAGT TAGAGCTTCA TCCGCCTTCC GAAGAATGGC ATAGAAGAAA TTTGTTTGGT GGTCCCGGGT CAGAGCCTGA GGATATGGTC CTGACAGACG ATGTTTCCAA GCTGAGTAAC TCCTTAGATC TGTCTGATAC AAGCTTTTCC GGAATATGTG ATGGATACAA CAGAGTCCAT AGTCTTTGGC CTAGAAAGCG CAGGATGTCT GAAAGAGATG CAGCTTTTGG TTCAAATACT TCTGTGGGTT TGGGTGCATA TCTTGGAATC ATGGGTTCTC GTAGGGATGT TGTCACCGCG ACATGGAAAA CTGGTCTTGA CGGAGTTTGG TACAAGGTTA CTCTCATACA TTTCCCTTAA |
| Length | 3660 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 21262624.. 21269443 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G04920.1 |
| Description | sensitive to freezing 6 |
| TAIR curator summary | Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. |
| Alias | [AtSFR6][IEN1][MED16][SFR6][INSENSITIVE TO EXOGENOUS NAD+ 1][MEDIATOR 16][SENSITIVE TO FREEZING 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg490579 | SEC7-like guanine nucleotide exchange family protein |
| 3.87298 |
Ahg479052 | Coatomer, beta' subunit |
| 7.54983 |
Ahg337635 | Nuclear pore complex protein |
| 7.68115 |
Ahg474332 | tRNAse Z3 |
| 8.60233 |
Ahg474980 | Protein kinase superfamily protein |
| 10.4881 |
Ahg315588 | DEAD-box protein abstrakt, putative |
| 10.583 |
Ahg476765 | Prolyl oligopeptidase family protein |
| 10.6771 |
Ahg950187 | DNA topoisomerase 1 beta |
| 11.5758 |
Ahg927732 | Pentatricopeptide repeat (PPR) superfamily protein |
| 12.2066 |
Ahg934547 | ammonium transporter 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|