| Annotation |
|---|
| Description | jgi|Araly1|950187|scaffold_802074.1 |
| Sequence |
AATAACTTGC CTTGTTGGGT ATGGCCACTG AGGCGTTTGT GAAGCCAGTT GTGCCAAATG GTCATGACGG GTACGAGGAT GAAGATGAAG ATGACATTCC TTTGGTGTTT AAGAGAACCA GTAATACAGC ATCAACCACA AATCGTTCAA GGCCTATTGA TAATGCTATG AGAAACTCGG TTATTGGCTC CACCAAGTCC CCACCACCAA TGAGGTCTCC TTTAACAAGC CCGAATAGGT CAGCTTCTTC ATCTGCTAGA AGTTCAATGA TGAAACCAAC AACATTACCG TCATCTTCAT CTGTTCAACG TTCGACTGTG AAGTCACCGT TGCGAGATGA TAGATCCGTT GTTGCTAAGG AGAGGAACGG TTTGGGAAAA GCTCCCTCTG TCTCCAAAAC TGATGATGAG GATTCTGAGG ATGATAAACC CTTGAGTGCC AGACTTAAAA TGGATTCTAA GGAGGTTATC AAACAGCCGA GCTCTTCCGG GCGTGGGAAT ATGCAGCAAG CAGTACAGAA GAGCAACATG AGGCCTCAGG GATCGAGCGA TAACACTAAA AAGAAAGTTT TGGATGAGAG AGCTCCCGTG TCCTCAATGG TTCAGACAAA GACCAGTGTG GGTACATCAA GTAGCAAGCC TGTTCATAAT GAACAGAAGA GACCTTTGGT TAACAATATC AATCGGAATG GCTTAAAACC GAAGACTGAA GGGGTCAGTT CTCAGGCACC TGCTAAGAGA CCTCTTGAGA AGGGGAGTTC TTCGAATCAA TCTTCTGTTA AGAGGCTCAA GCTGTCAGAG CCAGCTAGAC CAGTGAAAGT GGAACAAGGT TCACATAATG CAGCTACGCA AGATGCCAAA GGAAAGAATC TGGATGCATC AAAGCCGTTG AGAGCTAACA AAGCAACTGT TAAAGAAGAT AACTCAGATG ATGATGATCA TGTTCCTATT GCCTCAAGGA TAAAGTCAGA TTCCTCAAAA TCTTCCTCCG CGAAGCCAAG TTCTAGTAAA ACGATCGCTT CTTCATCCAG AATAATAGCT AAAAAGCCCA ACAAATGGGT GAAAGATTCT AAGTATTCGA AATCTTCAAA ATCATTACCT TCTGGAGATG GGCAAACGAA ATGGAAAACT CTAGAGCACA ATGGTGTCAT TTTTCCACCT TCATATAAGC GTCATGGGGT TAAGATATTG TATCAGGGAA AGCCTGTTGA CTTAACTCCT GAACAAGAAG AGGTTGCAAC TATGTTTGCG GTGATGAGGG AAACAGAATA TTACAATAAA CCAAAGTTCA GAGAGAATTT CTGGAATGAT TGGCGGAGAC TACTTGGAAA GAACCATATG ATTAAAAATT TGGATGATTG TGACTTCACT CCCATATATG AATGGTATAT ACAGGAGAAG GAGACAAAGA AACTAATGAC TGCAGAAGAG AAAAGGATTT TGAAAGAGGA GAAATTAAAG CAGGAGGAGA AATACATGTG GGCTGTTCTT GATGGTGTCA GGGAGAGGAT TGGAAATTTC AGAGTTGAGC CCCCTGGGTT GTTTCGAGGC CGGGGAGAAC ATCCTAAGAT GGGGAAACTG AAAAAGCGGA TTCGTCCTTG TGATATTACA ATCAACATTG GTAAAGAGGC GCCTGTTCCA GAATGCCCTA TCCCTGGTGA AAGATGGAAA GAAGTTAAGC ATGACAATAC TGTTACCTGG CTTGCTTTTT GGAATGATCC TATCAATCCA AAAGAGTTCA AGTATGTATT CTTGGCAGCT AGCAGTTCGT TGAAGGGACA AAGCGACAAG GAGAAGTATG AGAAAAACTA TATAGGGAGT ATTAGAGCAG CATACACCAA AGATTTTAAT AACAAGGATG TAACAAAGCG GCAAATAGCA GTTGCGACAT ATCTCATCGA TAAGCTAGCC CTTAGGGCTG GAAATGAGAA GGATGACGAT GAGGCAGATA CTGTTGGTTG CTGTACATTG AAAGTAGGAA ATGTGGAGTG TATTCCTCCA AATAAGTTAA AGTTTGACTT CCTTGGTAAG GACTCTATTC AGTATGTAAA CACAGTTGAG GTTGAGCCTC TGGTGTATAA GGCAATTGGG CAGTTCCAAG CGGGAAAATC GAAAACCGAT GATCTATTTG ATGAGCTAGA TACTTCAAAA CTCAATGCTC ATCTTAAGGA GCTTATGGCT GGTCTCACAG CCAAAGTCTT CCGTACATAT AATGCATCCA TCACATTGGA TTTAATGTTG AGTAAAGAAA CCAGAGATGG TGACGTTCCT GAAAAAGTGG TGGTTTATCA GCAAGCAAAC AAGGAGGTTG CTATCATTTG TAACCATCAA CGTACTGTGT CAAAATCTCA CGGAGCACAA GTCGAGAAGC TGGCTGTGAA AATAGAAGAA CTAAGGGAGC AAATAAAAGA GCTGAATATT GATCTCGACA GGGCTAAAAA AGGAAGAACA CCATTAATGG GATCTGATGG AAAGAGAAAG AGGAACTTAA CACCTGAAGC ATTGGAGAAG AAGATAATGC AAACGCAAGG TAAGATCGAG AAGATGGAAA GGGATATGCA AACGAAGGAA GATATGAAAA CCGTTGCATT GGGCACATCT AAGATCAATT ACATGGATCC TAGGATCACT GTTGCATGGT GCAAACGACA CGATGTCCCC ATTGAGAAGA TATTTAACAA GTCTCTTCTG GCTAAGTTCG CTTGGGCAAT GGACGTTGAT CCTGAGTTCA GATTCTGTTT AAGCAATGAT GAATAAATAC ATTTTCGTTG AGGCCAGTT |
| Length | 2779 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 15961408.. 15965775 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55310.1 |
| Description | DNA topoisomerase 1 beta |
| TAIR curator summary | Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality. |
| Alias | [TOP1][TOP1BETA][TOPOISOMERASE 1][DNA topoisomerase 1 beta] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.74597 |
Ahg321506 | vacuoleless1 (VCL1) |
| 9.94987 |
Ahg487067 | ubiquitin-protein ligase 4 |
| 10.6771 |
Ahg490126 | sensitive to freezing 6 |
| 17.4929 |
Ahg493254 | LSD1-like 3 |
| 17.8885 |
Ahg488346 | SIN3-like 2 |
| 19.8997 |
Ahg915150 | Protein kinase superfamily protein |
| 23.4521 |
Ahg471984 | Protein phosphatase 2A, regulatory subunit PR55 |
| 23.9792 |
Ahg939002 | sacI homology domain-containing protein / WW domain-containing protein |
| 29.2916 |
Ahg491382 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| 29.4958 |
Ahg479552 | EPS15 homology domain 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|