| Annotation |
|---|
| Description | jgi|Araly1|490319|fgenesh2_kg.6__3453__AT4G02460.1 |
| Sequence |
AGCTGCGTCC CACTGTTGAA ACTCTTTCTT CTTCATCCTC ACAATTTGTC TCACCTTCGA TTTTGGCGGC AAAACATAAA CCCTAAGGGC TTTCGCACTC TCAGATTACT GTGGTGTTGA TTCGATTGAG GATATTAACC GGTTTATATG GTTTTGAAAA TGCAAGGAGA TTTGTCTCCG TCTCCGACGA TTACTAGCTC TCCTTTGATA AGACCGATAA ACAGAAACGT AATTCACAGA ATCTGCTCCG GTCAAGTCAT CTTAGACCTC TCTTCTGCCG TCAAGGAGCT TGTGGAGAAC AGTCTCGACG CCGGAGCTAC CAGTATAGAG ATCAACCTCC GAGACTACGG CGAAGACTAC TTTCAGGTCA TTGACAATGG TTGTGGCATT TCCCCTACCA ATTTCAAGGT TCTAGCACTC AAGCATCATA CTTCTAAATT GGAGGATTTC ACAGATCTTC TGAATTTGAC TACTTATGGT TTTAGAGGAG AAGCCTTGAG CTCTCTCTGT GCATTGGGCA ATCTGACGGT GGAAACAAGA ACAAAGAATG AGCCAGTTGC TACGCTCTTG ACGTTTGATC ATTCTGGTTT GCTTACTGCT GAAAAGAAGA CTGCACGCCA AATTGGTACC ACTGTCACTG TTAGGAAGTT GTTCTCTAAT TTACCTGTAC GAAGCAAAGA GTTTAAGCGC AATATACGCA AAGAATATGG GAAGCTTGTA TCTTTGTTGA ACGCATATGC ACTTATTGCG AAAGGAGTGC GGTTTGTCTG CTCTAACACG AGTGGGAAAA ATCCTAAGTC TATTGTGCTG AACACACAAG GGAGGGGTTC ACTTAAAGAC AATATCATAA CAGTTTTCGG CATGAACACC TTTACAACTC TACAGCCTGT TGGTATGTGT ATATCAGAAG ATTGTAGAGT TGAAGGGTTT CTTTCCAAGC CTGGACAGGG TACTGGACGC AATTTGGCAG ATCGACAGTA TTTCTTTATA AATGGTCGGC CTGTTGAAAT GCCAAAAGTC AGCAAATTGG TGAATGAGTT ATATAAAGAT ACAAGTTCTC GGAAATATCC AGTTGCCATT CTGGATTTTG TTGTGCCAGG TGGAGCATGT GATTTGAATG TCACTCCCGA TAAAAGAAAG GTGTTCTTTT CTGATGAGAA TTCTGTTATC GGTTCTCTGA GGGAAGGTCT GAACGAGATA TATTCCTCTA GTAATGCGTC TTACATTGTT AATAGGTTTG AGGAGAATTC TGAGCAACCA GATAAGGCTG GAGTTTCATC TTTTCAGGAG AAATCAAATC TTATGTCAAA AGAAATTGTT CTGGATGTCA TTTCTAGAAC AAGACAAGGG GAAGCTATTG CAGGGGAAAA CCAATCCTCA ATGGAGGCTG AGATTGATAA TAGTTCGCCA ATGGAGAAGT TTAAGTTTGA CATCAAGGCA CGTGGGACTA AGAAAGGGGA AGGTTCTTTA TCAGTCCATG ATGTGTCCCT AACTGTAACT CACCTTGACA AGGCAACTAG CAAAGGTTTG CCTCACTTAA ATGTGATGGA GAAAGTCACC AATGCAAGTA AAGACTTGGG CAGTCGCTCT ACCTTTTCCC AGTCAACTTT GAATACTTTT GTTACCATGG GAAAAAGAAA ACATGAAAAC ATAAGCACCA TCCTCTCTGA AGTACCTGTT CTCAGAAACC AAACTTCTAG TTATCGTGTG GAGAAAAGCA AATTTGAAGT TCGTGCTTTG GCTTCAAGAT GTCTTATGGA AGGCGATCAA GTAGATGGTA TGGACATCTC GAAGGAAGAT ATGACACCAA ACGAAATGGA TTCTGAACTA GGCAATCAGA TTGCTCCTGG AACACAAACT GATAATACTG AAAGACATGA AAGAGAACAT GAAAAGCCTA TATGTTTTGA AGAACCAACA TCAGATAACA CAATCACCAA GGGGGATGTG GAAAGAATTT CGGAGGACAA TCCAGGGTGC AGTCAGCCAC TGCGATCTGT GGCCACAGTG CTGGACTCCC CAGCTCAGTC AACCGGTCCA AAAATGTTTT CCACATTAGA ATTTAGTTTC CAAAACCTCA GGGAAAGGAG GTTAGAGAGG CTGTCGAGAT TGCAGTCCAC AGGTTATGTA TCTAAATGTA TGAATACGCC ACGGCCTAAA AAGTGCTTTG CTGCTGCAAC ATTAGAGTTA TCTCAACCGG ATGATGAAGA GCGAAAAGCA AGGGCTTTAG CTGCAGCTAC TTCTGAGCTG GAAAGGCTTT TTCGAAAAGA GGATTTCAGG AGAATGCAGG TACTCGGGCA ATTCAATCTT GGGTTCATCA TTGCAAAATT GGAGCGAGAT CTGTTCATTG TGGATCAGCA TGCAGCCGAT GAGAAATTCA ACTTCGAACA TTTAGCAAGG TCAACTGTCC TGAACCAGCA ACCCTTACTC CAGCCTTTGA ACTTGGAGCT CTCTCCAGAA GAAGAAGTCA CTGTGTTAAT GCACATGGAT ATTATCAGGG AAAATGGATT TATTCTAGAG GAGAATCCAA GTGCTCCTCC CGGAAAACAC TTTAGACTAC GAGCCGTTCC TTATAGCAAG AATATCACCT TTGGGGTCGA AGATCTTAAA GACCTGATCT CAACTCTAGG AGATAACCAC GGTGAGTGTT CGGGTGTGAG TAGCTACAAA ACCAGCAAAA CAGATTCGAT TTGTCCATCA CGAGTCCGTG CAATGCTAGC ATCCCGAGCA TGTAGATCAT CCGTGATGAT CGGAGATCCA CTTAGAAAAA ACGAAATGCA GAAGATAGTA GAACACTTGG CAGATCTCGA ATCTCCTTGG AACTGCCCGC ACGGACGACC AACGATGCGG CATCTTGTGG ACTTGACAAC TTTACTCACA CTACCTGATG ACGACAATGA TGATGATGAT GCAACCATCT CATTGGCATG AACTAAAAAA GTCTTAACGT ATTTAGATGT GAGAATCCTT AGAGTTAACA TTGAGGAACA CTCGGTCATA ACTAACAATC GTAAATTTAA TTTGTTTGCC TTAGTCTATA TGATCTTCTT GGTCACAACA GGTAA |
| Length | 3065 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 22227450.. 22231950 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G02460.1 |
| Description | DNA mismatch repair protein, putative |
| TAIR curator summary | Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. |
| Alias | [AtPMS1][PMS1][POSTMEIOTIC SEGREGATION 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg482011 | coenzyme Q 3 |
| 17.7482 |
Ahg477036 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein |
| 20.9284 |
Ahg487368 | nuclear pore complex protein-related |
| 25.6905 |
Ahg927902 | BTB-POZ and MATH domain 4 |
| 31.305 |
Ahg323545 | Aldolase-type TIM barrel family protein |
| 33.4664 |
Ahg490566 | cationic amino acid transporter 9 |
| 33.9411 |
Ahg929122 | F-box and associated interaction domains-containing protein |
| 34.4964 |
Ahg905901 | vacuoleless1 (VCL1) |
| 40.2492 |
Ahg496250 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
| 43.8178 |
Ahg329070 | MAP kinase/ ERK kinase 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|