| Annotation |
|---|
| Description | jgi|Araly1|490605|fgenesh2_kg.7__38__AT4G38430.1 |
| Sequence |
GAAAGGAGTC TTTTTTATTT TTTATCTCTC ATCTCTCATC TCTGCTTTGC TTTTTATCAA ACAAGCTCGC ATCATCATCA CATCCACTTC CTTCTTCTTC CTTTCTCTTT GCCCAAATGT GGATTCTTTG AGCCGTTATT AGATCTCTGC CGCCTACCTA CAATAATGGG GAGCTTATCT TCTGAGGAAG ACGACCAAGT CTCTTCCGAG AGATGCGGAA GTTACAGTCC CAGCGCCGAC ATTAGCGAGT CTGAGAGTTC CACCAGCTTC GACGGCGAGG GACCCTCTAG CTCCATCCCT TCTTCCCCCC GGGTTGTCGC TGGGAGAGGC TTTTACTTCC CGCCGCCAGT TATGCTTCCG GTGATCGGCG GCAAAGATGT GCTCTGGGAT GACAAACAGT CAGACAACAA CGATTTCTCC GAAATTGAGA TGATGAAGGA GAGATTTGCT AAGCTACTTC TCGGAGAAGA CATGTCAGGA GGAGGTAAAG GTGTTTGTAC GGCGCTTGCT ATCTCCAACG CCATCACCAA TCTCTCTGCG ACTGTCTTCG GCGAGCTATG GAGGCTTGAG CCTCTTGCTC CTCAGAAGAA GGCTATGTGG CGCAGAGAAC TTGAATGGCT ACTCTGTGTT AGCGATTCTA TCGTTGAGCT CATTCCTTCC CTTCAGCACT TCCCCGGAGG CGGCACTTAT GAGATCATGG AGACCCGTCC ACGCTCTGAT CTCTATGCCA ATCTCCCTGC TCTCAAGAAG CTCGATGCTA TGTTGATCGA TATGCTTGAC GCTTTCTCCG ATACCGAGTT CTGGTATACT GATCGCGGCA TTGTTCTTGG AGAATGTGAC AAGGATTCTT ACAATTCCCC AGCTTCCGTT AGGCAGGAGG ACAAGTGGTG GCTGCCTTGC CCTAAGGTTC CGCCTAACGG TTTGTCAGAA GAGGCCAGGA AGAAACTGCA GCAGTGTCGG GACTTTGCTA ACCAGATTCT CAAGGCTGCA TTGGCAATTA ACAGCGGTGT GCTCGCCGAA ATGGAGATTC CCGACCCTTA CTTGGAGACT TTGCCCAAGA GCGGAAAGGA ATGTCTTGGA GAGATCATCT ACCAGTACTT AACTGCAAAC AAGTTCTCTC CCGAATGCCT CCTAGACTGT CTTGATCTCT CATCGGAGCA TCAGACTCTT GAAATCGCCA ACCGGATTGA GGCGGCTGTG CACGTTTGGA GACAGAAGAA TGGGAGGAGG CACAAGAAGC AGGCGAAACT AAAGCTGTCT TCATGGGGTG GCAAGGTTAA AGGCCTTGTT AATGACACCG AAAGAAATGA TTTCCTAGTG CAGAGAGCCG AGACCCTCTT GCAGAGTCTT AGGATCCGTT TTCCGGGACT TCCCCAGACA ACGCTGGACA TGAACAAGAT TCAGTACAAC AAGGATGTAG GGCAATCAAT TCTGGAGAGT TACTCGAGGG TGATGGAGAG CATGGCCTTC AACATCACGG CCAGAATAGA TGATGTGCTT TATGTTGATG ATGCCATGAG AAGATCCATC TCTGTCACGG AAACGCTATC CCTATTCAGC ATCAATGGAC TCAACGGTCA GAAAGCGTTC TCTGTGCAGA GCTCTCCGCA TGGTTCACCA TTTGCAACGC CTTCCCTAAG TGTAGCATCG AGGAGCCCGA GGAGAGCACC GCCGCTGTAT TCAGTGAAGA GGAATGGGAC GAGAGAGAAG GGAATAATGG GGGAAACAGA GAAAGCATGG TCGTATGCGG GGAATCTGAG TTCAAGAAGA GTAACGGGAG TGACGCCGGA AAGAGATTAA GGTTGAAAAT AGAAGAATGT AAATCAATGG TTGTAGAGAC TGTAGTTGTT TGTTGTTAGT CTGACTACGA AGAGTATTAT TATGGTAATA GCAACAAGAA TGTTAT |
| Length | 1906 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 100757.. 103037 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G38430.1 |
| Description | rho guanyl-nucleotide exchange factor 1 |
| TAIR curator summary | Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity. |
| Alias | [ATROPGEF1][ROPGEF1][ROP (rho of plants) guanine nucleotide exchange factor 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 18.868 |
Ahg941617 | germin 3 |
| 27.6767 |
Ahg480276 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| 28.8964 |
Ahg472226 | tubulin beta-5 chain |
| 32.7261 |
Ahg483684 | FASCICLIN-like arabinogalactan protein 8 |
| 39.6989 |
Ahg480193 | O-Glycosyl hydrolases family 17 protein |
| 41.7612 |
Ahg475890 | alpha-fucosidase 1 |
| 45.3542 |
Ahg495136 | Heavy metal transport/detoxification superfamily protein |
| 48.3735 |
Ahg484368 | Thioredoxin superfamily protein |
| 52.6498 |
Ahg908693 | Auxin efflux carrier family protein |
| 57.1139 |
Ahg482332 | Ribosomal protein S5 family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|