| Annotation |
|---|
| Description | jgi|Araly1|491396|fgenesh2_kg.7__829__AT4G32980.1 |
| Sequence |
AGGGTCCCTT CCCTAATTTA AAGCCTGCAA CAGAAATGAG TGCACTTCTC TGTAGTAAAC AGTAACACAT CGGTCTTCTT CATGTCTTTG GATTTCTTTT TCGGATTTGG ATTCTGTTTC AACCATATAT TTCTTTAGAT AAATACTAGA TGACATTCTT CATCTCTTTC TCTGTGAACA ACATTTTAAA TAAATGGAAT TTCAAGAAAG AAATTATATA AGATTTTCTT GATTCTGATT TATCTTTTTT TTTGGTCGGA AGATCTTAAA GATATGAAAA TGGATTCGTG TCATAAACAG AGGGAGCTCC GTACCTGATT TGGCCCTCCT TCTTTTCAAC TTCTTCTTTC TTGAATTTTT TAAAATATTT TCCCCTCAAA AATAAAAAGT TTTGGTTTGA TCATTTAGTT ATAAAATGTT GCTATTTGTT GATCTAGAAC TCTGAATCTT TTGGTGAGGC AGATGATGAA GATTCTGGAC TTCTTCATGA AATTGTAATA AAAGTAAGAA CATAGAGAAG CTGCGGAATG AAAGTACACT GTTCTTTCAC GGAGAAAGAA GAGAAATAAG CATTTTCTTC TTCTTCAGTT TTTAACACAC ATTTTGGAAA TTTTGGTGTA AAAATTCTCT TTGGAACGTT TTGTTGTCTG AAATCTTCCC AAAGGTTCTA TCAGTAGAAG AAGGATAAAG GTTCTTAGAA ACCCAATGGA CAACAACAAC ACTTTTAGTT CTCTGGATAA TGCCATGACT AACCAAAATC CTCTTCTCAT GGATTTTATT CCTTCAAGAG AAGATTCAAC TTCATTCTCA ACAATGCTTC CATGGAACTC CATCAGATCA GATCCTCTAC AAATGGGTGG CTTTGATATC TTCAATTCTA TGCTGACTAA CAAATACTTA TCATCTTCTT CACGGTCTAT CGATGTTCAA GATAACCGCA ATGTCGAAAG CTTTGAGTTC ATGGCTCCTC CTCCTCCTCC TCCACTTCAT CCTTTGGATC ATTTAAGGCC CTATGATGAT TCCTCAAACA ACATGTGGGG TTTTGAGGCA AATAGTGTGT TTCAGACATA TTCAGGTGTT GTTGGTCCAA GTGAACCAAT AATGTCTACT TTCGGTGAAG AAGATTTTCC GTTCCTGATT TCGAATAGAA GAAACAACGA GCTTTCATTG AGTCTTGCCA CAGATGTTTC TGATGAATGC TCGGAGATAA GTCTTTGTGC TGCTACTAGA TTAGCCTCAG AGCAAGCTTC TTGCAGCAGC AAAGACATTT CTAATAATGT TGTCACTCAA GGTTTCTCTC AACTTATATT TGGCTCAAAG TACCTTCACT CTGTTCAAGA AATACTATCT CATTTCGCCG CATACTCGCT CGATTATTCA TCTCGAGGAA CCGAGCCAGG GGCTGCTAGT TCGGCCTTTA CTTCACGTTT TGAGAATATT ACCGAGTTTC TTGATAGCGA TTCTAATAAC TCGGAGGCGG TTTTCGGATC TACATTTCAA AGAAGAGCAT TAGAAGCTAA GAAAACCCAT CTCCTGGATC TTCTACAAAT GGTGGATGAT CGATATAGTC ATTGCGTAGA TGAGATTCAT ACGGTTGTAT CAGCATTCCA CGCTGCAACC GAGTTAGATC CGCAGTTACA CACCCGGTTT GCCCTCCAAA CCATTTCTTT CTTATACAAG AACCTGAGAG AGAGAATCTG CAAGAAGATA ATCTCTATGG GATCTGTATT GGAGAGAGGC AAAGACAAGT CTCAAGAAAA CTCTATGTTC CACCAGCATT GCCTTCTTCA GCAGCTGAAA CGAAAGAACC ATCAGATTTG GAGACCGCAA CGAGGTTTGC CTGAGAAATC TGTATCGGTT CTACGGACTT GGATGTTCCA AAACTTCCTT CACCCTTACC CGAAAGATTC GGAGAAACAT CTTCTAGCTA TACGAAGTGG CTTGACAAGA AGTCAGGTAT CAAACTGGTT TATAAATGCG CGGGTTAGGC TATGGAAGCC GATGATAGAA GAGATGTATG CGGAAATGAA CAAGAGGAAG CTAAACAACA GTCACCTTCA ACCCAACGGA GCAACTCTTC GAATGCCAAA ATCTGTTATG ATGAGCCAAG CAATGCAAAA ATAAGACAAC AATTGTGTTA CCAACTTGTG ATAATTAGGC AATTGCTACT ATATGATTGC CCAAAACCTA AAGCATGTAC GACTATCATT ACGTATGTTA TAATTGTATA TACAACTTCT T |
| Length | 2241 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 3290602.. 3293890 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G32980.1 |
| Description | homeobox gene 1 |
| TAIR curator summary | Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. |
| Alias | [ATH1][homeobox gene 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.8167 |
Ahg480711 | histone H1-3 |
| 14.2478 |
Ahg356714 | Protein of unknown function (DUF1012) |
| 15.748 |
Ahg941035 | Ankyrin repeat family protein |
| 27.7489 |
Ahg481314 | FAD-dependent oxidoreductase family protein |
| 29.4618 |
Ahg483270 | Remorin family protein |
| 29.4618 |
Ahg473866 | Granulin repeat cysteine protease family protein |
| 30.5123 |
Ahg472192 | Wound-responsive family protein |
| 42.2137 |
Ahg924903 | Protein of unknown function (DUF761) |
| 42.9884 |
Ahg916127 | Calcineurin-like metallo-phosphoesterase superfamily protein |
| 43.1625 |
Ahg893015 | RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|