| Annotation |
|---|
| Description | jgi|Araly1|492273|fgenesh2_kg.7__1706__AT4G25540.1 |
| Sequence |
CTAAGAAAGC GCGCGAAAAT TGGCAACCCA AGTTCGCCAT AGCCACGACC ACGACCTTCC ATTTCTCTTA AACGGAGGAG AGAATACGAA GAGAGCAATT ATGGGCAAGC AAAAGCAGCA GACGATTTCT CGATTCTTCG CTCCCAAACC CAAATCCCCG ACTCAGGAAC CCAATCTTGT ACCCGAATCG TCAACACCGC CACCGAAGAT ATCCGCCACT GTCTCCTTCT CTCCGTCTAA GCGTAAGCTT CTCTCCGACC ACCTCGCCGC CGCTTCACCC AAAAAGCCTA AACTTTCTCC TCACACTCAA AACCCCATAC CCGATCCCAA TTTACACCAA AGGTTTCTCC AGAGATTTCT GGAACCCTCA CCGGAGGAAT CTGTTCCCGA AACATCATCA TCATCCAGGA AGTACACGCC ACTGGAACAG CAGGTGGTGG AGCTAAAGAG CAAGTACCCA GATGTGGTTT TGATGGTTGA AGTTGGTTAC AGGTACAGAT TCTTCGGAGA AGATGCGGAG ATCGCAGCAC GCGTCTTGGG TATATACGCT CATATGGATC ACAGTTTCAT GACGGCGAGT GTGCCAACAT TTCGATTGAA TTTCCATGTG AGGAGACTGG TGAATGCAGG GTACAAGATT GGTGTGGTGA AGCAGACCGA AACTGCAGCC ATTAAGTCCC ACGGTGCAAA CCGGACCGGC CCTTTTTTCC GGGGACTATC GGCTTTATAT ACCAAAGCCA CGCTTGAAGC GGCTGAGGAT ATAAGTGGTG GTTGCGCTGG TGAAGAAGGT TTTGGTGCAC AGAGTAATTT CTTGGTTTGT GTTGTGGATG AGAGAGTTAA CACGGAGACT GGTATTGAAA TGAGTTTTGA TGTTAGAGTC GGTGTTGTTG GCGTTGAAAT TTCAACCGGT GAAGTTGTTT ATGGAGAGTT TAATGATAAT TTCATGAGGA GTGGGTTAGA GGCTGTGATT TTGAGCTTGT CACCAGCTGA GCTGTTGCTT GGCCAGCCTC TTTCACAGAA AACTGAGAAG TTTTTGTTGG CACATGCTGG ACCGACCTCA AACATTCGAG TGGAACGTGC CTCACTGGAT CGTTTCGGCA ATGGTAATGC AGTAGATGAG GTTATTTCAT TATGTGAAAA AATCAGTGCA AGCAACCTAG AAGATGATAA AGAAATCAAG GTGGAGGCTG CTGAAGAAGG AATGTCTTGC TTGACAGTTC ACACAATTAT GAACATGCCG CATCTGACTG TTCAAGCCCT CGCCCTGATA TTTTGCCATC TCAAACAGTT TGGATTTGAA AGGATCCTTT ACCAGGGGGC TTCATTTCGC TCTCTGTCAA GCAGCACAGA GATGACTCTC TCAGCCAATA CACTGCAACA GTTGGAGGTT GTGAGAAATA ATTCAGATGG ATCGGAATCT GGCTCCTTAT TCCATAATAT GAATCACACT CTTACAGTAT ATGGTTCCCG GCTCCTTAGA CACTGGGTGA CTCATCCTCT TTGCAATAGA AATCTGATAT CTGCTCGCCT TGATGCTGTT TCTGAGATTG CTGCATGCAT GGGATCTCAC AGTTCATCCC AAAACAGTGA TGAGTTGGTT GAAGACGGTT CTGAGAGAAC AATTGTTTCA CCTGAGTTTT ATCTCGTGCT CTCCTCAGTC TTGACAGCTT TGTCTAGATC TTCGGATATT CAACGTGGAA TAACAAGAAT CTTTCATCGG ACTGCTAAAG CCACAGAGTT CATTGCAGTT ATGGAAGCTA TTTTACTTGC GGGGAAGCAA TTTCAGCGGC TTGGTATAAA GCAAGACTGT GAAATGAGGA GTATGCAATC CGCAACTGTG CAGTCTTCTC TTTTGAAAAA ATTGATATCT GTTGTTTCAT CCCCTGCTGT GGTTGATAAT GCCGCAAAAC TTCTCTCTGC CCTGAATAAG GAAGGGGCTG TTCGAGGAGA TTTGCTCGAC ATACTAATCA CTTCCAGCGA CCAATTTCCT GAGCTTGCTG AAGCTCGCCA AGCAGTTTTA GTCATCAAGG AAAAGCTGGA TTCCTTGATA TCTTCATTTC GCAAGAAGCT CGCAATTCGA AATTTGGAAT TTCTTCAAGT GTCGGGGATC ACGCATTTGA TAGAGCTGCC CGTGGATGTC AAGGTCCCTA TGAATTGGGT GAAAGTGAAT AGCACCAAAA AGACTATTCG ATATCATCCC CCAGAAATAG TAGCTGGGTT GGATGAGCTA GCTCTAGCAA CTGAACATCT TGCCATTGTG AACCGAGCTT CGTGGGATAG TTTTCTCGAG AGTTTTAGTA GATACTATAC AGATTTTCAG GCTGCCGTTC AAGCTCTTGC TGCGCTGGAC TGTTTACACT CCCTTGCAAC TCTATCTAGA AACAAGAAGT ATGTATGTCC CGTGTTTGTG GATGACTGTG AACCAGTTGA GATAAACATA CAGTCTGGTC GTCATCCTGT ATTGGAGACT TTATTACAAG ATAACTTCGT CCCAAACGAC ACAAGTTTGC ATGCAAAAGG GGAATATTGC CAAATTATCA CCGGACCTAA CATGGGAGGA AAGAGCTGTT ATATCCGTCA AGTTGCTTTA ATTTCTATAA TGGCTCAGGT TGGTTCCTTT GTACCAGCTT CATCCGTTAA GCTGCACGTG CTTGATGGTG TTTTCACTCG GATGGGTGCT TCAGACAGTA TCCAGCATGG CCGAAGTACC TTTCTAGAAG AATTAAGTGA AGCGTCACAC ATAATCAGAA CCTGCTCTTC TCGTTCGCTA GTTATATTAG ATGAACTTGG AAGAGGCACT AGCACACACG ACGGTGTAGC CATTGCCTAT GCAACATTAC AACATCTCCT ATTAGAAAAG AGATGTTTGG TTCTTTTTGT CACGCATTAC CCTGAAATAG CTGAGATCAG TAACGGATTC CGAGGTGCTG TTGGGACATA CCATGTCTCG TATCTGACAT CGCAGAAGAA GAAAAGCGGA TTTGATCATG ATGATGTGAC CTACCTATAT AAACTTGTGC GTGGTCTTTG CAGCAGGAGC TTTGGTTTTA AGGTTGCTCA GCTTGCCCAG ATACCTCCAT CATGTATACG TCGAGCCATT TCAATGGGTG CAAAATTGGA AGCTGAGGTA GGTGCAAGAG AGAGAAATAC ACGCATGGGA GAAGCAGAAG GACATGAAGA ACATGGTGCC CCTGGAGATT GGACAGGCGC AGAAGAATCA ATTTCGGCTC TAGGTGACTT GTTTGCTGAC CTGAAATTTG CCCTCTCTGA AGAGGACCCT TGGAAAGCAT TCGAGTTTTT AAATCATGCT TGGAAGATTG CGGCAAAATC AAACTAAAAC CAACTTGATC ATTTTGATTT AATCTTAACA TTATAGCAAC TGCAAGGTTT TGAAGTTAGT TGCGTAGCAA CTTATGTGTG TATTAGTATA ACAAGAAAAC AGAATTAGAG AGACGGATTC TAATCCGGTG TTGTAGTAC |
| Length | 3479 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 6586313.. 6591966 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G25540.1 |
| Description | homolog of DNA mismatch repair protein MSH3 |
| TAIR curator summary | encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). |
| Alias | [ATMSH3][MSH3][homolog of DNA mismatch repair protein MSH3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.9332 |
Ahg490548 | AT hook motif DNA-binding family protein |
| 17.3205 |
Ahg942129 | |
| 18.9737 |
Ahg491381 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
| 27.3313 |
Ahg940242 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| 42.3556 |
Ahg473289 | Subtilase family protein |
| 61.4817 |
Ahg494518 | |
| 74.162 |
Ahg343136 | UDP-glycosyltransferase 73B4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|