Detail


ID : Ahg940242

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|940242|scaffold_600786.1
Sequence
TCAGCTCTCA GATTCAATCA ATGGAGGTTT CCGAAGAGCA ACGGCGGAGA GACGAAGCGA ACCGATTAGC TTTTGCGGAG AAACGAAAGA CGTCGTTTGA TTCTTCAGAA AACCCACAGC GACAACAAGA TTTCAGGTTA GCTAAATGTC GAAAGCTCGA CGGTGGTAAA GATGTCTGTT TTCAAGAAGG GTATCGGAAC TACGAACCGG AACGAGGATT GAGTACTAGT GTACCGGAAA AGTTCCGCGT CAGGCTCGAG ATCTGTTCTC CTGATTCGTT TTCGGTGACG CCGGTTCAAT TGCAAGGGTT TCGATGCCCA GAAGAGCAAG AGTGTCTTCG TCAATTGAGA GAGATTCTAT CTGAGGCGAT TCCTTTACAC TACACTCAAA ATGATGACGG AGGAAAAGCT GGGGTTTATA AGATTAGGGA CTACAATATG GTCTCTGGAT GTCTAAAAAG GTCCAAGAGC GTTGAAGTTG AAGAGATACC TTGGAAAACG TTGGCTGTTG TTGAGAAACT TTCCCAGTCA TTCATTTCTG GGAAATGGCA ACCTTGTATA CCTGAACATT ATACGGAGGA GAAGGTTGAA CAACTGATTG AAACCCTGCC AAGAAAATTG GTGAATGCCC TTTTGCCTTT CCAACTTGAT GGTCTAAGAT TTGGTTTACG GAGAGGTGGC AGGTGTTTCA TTGCTGATGA AATGGGGCTT GGAAAGACGC TTCAGGCCAT TGCCATTGCT GGTTGCTTCA TAAGTGAGGG TTCCATACTT GTTGTCTGTC CAGCTGTTCT GCGTTTCTCA TGGGCAGAAG AATTGGAACG TTGGTTGCCA TTTTGTTTGC CTTCTGACAT ACATCTCGTT TTCGGTCATC AAGATAATCC TGCCTATTTA CCAAGATGGC CAAAAGTTGT GGTTATCTCA TACAAGATGC TTCAGCATCT CCGGACGACC ATGCTAGAGC GAGAATGGGC CCTCTTGATA GTAGATGAAT CTCATCATCT ACGGTGTTCG AAAAAAAAGT CAGATCCACC TGAGATAAAG ACAGTCCTTA ATGTTGCTGA AAAGGTTAAG CACATAGTTC TGTTGTCAGG AACTCCTTCT ATATCGAGGC CCTTCGACAT TTTCCATCAG ATAAACATCC TATGGCCTGG TTTGCTGGGA AAAGACAAGT ATGAGTTTGC GAAAACCTAT TGTGAAGTTG GGCTTGTCAG AGGTATGCAA GGGAAGATTT TCCAGGATTT TTCAAAGGGT ACTCGCTTAC TGGAGTTAAA CATACTGCTA AACCAAACAG TGATGATAAG AAGACTGAAA CAGCATGTGT TAACACAGCT ACCCCCAAAA CGTAGGCAAA TCGTAACCAT CTTGCTAAAG AAGTCTGATA TATCTTTAGC AATGTCTATT GTCAGTGAGG CTAATCAGAA GGCTAATAAA CAAAAGGATG GTGCTATAGC AGAAGTCACA GAGAACTCAC ATGAACCTAA AGATCAAAAT GCTCAAGGAT CAAATGAAGC TGGACATGTA AATGCAGAGA ATTCTGATGG TCCGAACTCT GACAGAGAGA ATCAACTATG TGGGAAACTT TCCTATCAAC AACTTGGCAT TGCAAAGCTT TCTGCCTTTC GTGAATGGTT ATCCCTACAT CCACTTCTAT CAGGATTGGA TTATACCCCA GAAGATATTG ATGGAGACAC GAGCTCAACT AAAATGGTCG TTTTTGCTCA TCACCATAAG GTTCTGGATG GAATTCAGGA ATTTATATGT GATAAAGGGA TTGGTTTTGT TCGCATTGAT GGGACGACGT TGCCAAGAGA TAGACAATTG GCTGTACAGT CATTTCAGTT TTCTAGTGAG GTAAAAGTTG CAATAATTGG CGTAGAAGCT GGAGGAGTTG GACTGGATTT TTCAGCAGCA CAAAATGTTG TGTTCCTTGA ATTACCTAAA ACACCGTCAC TGTTGCTTCA GGCTGAGGAT AGAGCACATA GGCGAGGCCA AACAAGTGCA GTCAATGTAT ACATCTTCTG CGCAAAGGAT ACTATGGACG AGTCAAATTG GCAAAACCTG AACAAGAAGT TGCACCGTAT TTCATCTACC ACTGATGGAA AATATGATGG GAAGACCGAA ATCGAAATTG AAAGAGCATA TATTTTCAAG CCTGCTGAAG AAAGCAGTGA AAGAGAAGTT CTTGAAGCAC AACCATCAAA AGCTAATACT GTAGTAGCTG ATAAGATTGT TGAAAGCTGT GACGATCTGG GATCTGAGAC AGATGTATCA AATAGTATTG ATCTCAAGGA CGACATGACT TCTCATCTGG AAATATTAGA AGTCTGTAAA TTTGTTGAGA ATGGTTCCGG CTCTGAGATG AGATCTTCTG GCACCATTTG TTTAACTATG TTAGACCAGG AAAACCAAGA AAATCATCAG CCTAAAAATC TTATTGCTGA TGACGGGCTT GTGAAAGAAT TTGATTCCAG TTCCATTTTT CCACTCATAG ATTCTCTCAG ATTTGAGGTG AGCCAAAACA CTGGAAGAAT TCATTTATAC TCTTGCATTC TTGGGAAAGA TCCACGACCA AGGCCTCATT TCCAGAACTT CCGCCCAGAG GAGATTGAAG CAAGCAATAC AAGTCAGGGT CCCAATAAAG AAAAAAATCC TGAATCCATT ACAGATGATC CGGTTCATGT ACTTGCTATC TTAGAATTTA TGAAAGAGTG GAAATCACTA CGGCCAATCG AAAAGCGGAA ACTACTTGGA AAGCCTTTGC AACTACCTTT ATCACTGGAG TTGAGCTACT TGAGTGAAAG TACTAGTCAC AACAACGAGG GATTGCTTAG GGGAGGGAGC AAAAGACGAA ACACACCCTT TTCTGAGATC AGTATTCCTG TACCTGAAAA TGCAGTGTGG AAAAAGGTCA ACCTTCGAAG TGGCCACCAA AGAAAGGAAA AAGAATACAC CCAAGCTTGG AGTATGAGCA ACGAACCACT CTGTAAACTC TGTCAAAAGC CCTGCAAGGG AAACAACGCC AAAGAACCTG AGTATTTTGA GGATCTTTTC TGTGATCTTG CATGCTATGA AGATTACCGG ACGAGAACAA GCAGCAGATA CATTCGCCAG ATAGAACATG GAATTTGCAC AAACTGCGAA TTAGACTGCC ACCAACTTGT CAGACGGTTA AGGCCTTTAC CATTGGAAAA ACGCCGTACA TACATAAACA AAGTTGCTCC AGAATTGTTT GCGCGGAAGA ACCTGCTCGA AACCCTGGTT AATGATCCAA CTGAGGGTAA TGCTTGGCAT GCGGATCATA TCATTCCAGT CTACCAAGGC GGAGGTGAAT GCCGGCTAGA GAACATGAGG ACACTTTGTG TGGCTTGTCA TGCCAATGTC ACTGCAGCTC AATGCGGAGA ACGTAAACTG ATACGGTCCA AAGCCAGGAA GCAACTCAAA AACACTTTAA ACGAACTCAG AAACAATCCA AAGCAAACAG AACTGCCGGC TGAAGGCAAC ACAAAGGAGA CTGATTCAGC TACCGATGAA GAGGAAGATG AGCTAATGGT TGAAGTTCCT GGTAGTGCCT ACTCCATAGA TCAGAAAATC AGTCATGCCG CATAAAACTC ATTTTTTGAC TTGTC
Length3625
Protein Sequence
Protein Residue
Map Locationscaffold_6: 2922967.. 2929941
Download Sequence
A.thaliana
AGI-codeAT5G07810.1
DescriptionSNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
10.3923 Ahg496305 P-loop containing nucleoside triphosphate hydrolases superfamily protein
10.4881 Ahg910808 poor homologous synapsis 1
15.4919 Ahg490600 MATE efflux family protein
16 Ahg944648
24.7386 Ahg496551 GroES-like zinc-binding alcohol dehydrogenase family protein
24.8596 Ahg887806 TraB family protein
25.7876 Ahg932727 embryo defective 2410
27.3313 Ahg492273 homolog of DNA mismatch repair protein MSH3
30.7896 Ahg479358 MUTS homolog 2
34.8712 Ahg907461 3'-5'-exoribonuclease family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression