| Annotation |
|---|
| Description | jgi|Araly1|493270|fgenesh2_kg.7__2703__AT4G16144.1 |
| Sequence |
TTTCTCAGCG CCATTGATCC TTCGATCTCA GCAAAACTTT CGCCGGAAAA TTGATTAATC GGATACGGCG AGATGAAGAT TGATCTGAAC AAGGTGGCTC GTAAAATCGA AGTCGATAAT CGTATTCCTC TCCGTAATTA CTACCGCATC GCCGATAATC TCCTCCGACA GGCCAGTATA TATCGGGAAG AGAAGAATGT GGTGGATTTG TATATCATGC TTCTTAGATA TTCAAGTTTG ATTTCTGAAA CAATTCCTTT CCATCGAGAT TACCAGGCAT CGCTTCCACA AGAAAGACTT GGGAGTAGGA AGAGGTTGCG TGCTGTAATC AATGAGCTCG AGTCTCTGAA ACCGGAATTC AACCGGTTAG TGGATAAGCT GAATAGAGTT GAGGATGATT CCCATCAGGT TGGAAGTGAT CTCCCGATTG TATCATATAG TTCAGATGCT GTTGAGTGGC CTCCTGCTCA TAAAGCTTCA TACTCCGGAC CTGATATTAA CAAGCCATTG CCGACATCTC AACCATCCTG GACGCATAAC AATAATCTGA CATCATCTTC AAATCGCACA CAGATTGATC AGCAATTCCA GAAGCTATCT TTTGATTTTC TGCCTCCAAA CCAAGCAACC TTGTCAAGGC ATTCATTTCT AGGTCCGAAT GGTCTTAAAA GTCAATGGGT TGCACCCACG TCGGAGATAA AGGTTCAATA TCCGAGTAAT ACGGATTGGG GTTCTGCGGA CAATTCTGGT TTAATTGAAG CTGGACCAAG CGGTTCCTCA GCATCACATA ATGGTGATTC TCAAGAAGTC TCAACGCTGA ACTCTGTGCT CTCCTTAGAT GATGGTCGAT GGCAGCGTCA TTCTGTGGCA GTAAATTCCC AGTTTATTAG TGACGCAACT GAAGACCCGT TTCAGTTTGT CGGTATGAAG CAACCTTCCC CTCCTCCCGT GCTTGCCCAA GTGCATCAAG AGTTAGCCCA AATTTGCCCA TCTAAAGTTG CTGATCCTAG ACCAGGACCT GCAATTCCTT CTCTAGAAGG AAAAGAGGGT AGCAATTCTT ATCAGCATTT GCATGTGCCC GTGCGCATAA TGGATGATTT CCTAAGGCTA GCTCGGTCAA ACACAGAAAG GAATTTAGAA ACTTGTGGAG TACTTGCTGG CTCTCTGAAA AACAGGGTTT TTCATATCAC TACTCTCATA ATCCCAAAGC AGGAGTCTAC TTCAGATTCT TGCCAAACAC TAAACGAGGA AGAAATATTC GAAGTACAGG ACAGACTCTC TCTATTTCCC TTGGGTTGGA TTCATACACA TCCTACACAA ACTTGCTTCA TGTCATCAGT TGATCTTCAC ACACACTACT CATATCAGAT AATGCTACCG GAGGCAGTGG CAATTGTAAT GGCTCCAACA GACGAGTCAA CACCTCACGG AATATTCCAT CTCTCTGATC CATCAGGCGT ATCAGTGATC CGTAATTGCC AGCAACGAGG CTTCCACCCA CACGAAGAAT CAGAAGACGG TAACCCAATA TACGAGCATT GCTCACACGT CTTCCTCAAT GCCAAACTCA AATACGAAGT CCTGGATCTC CGCTAAAACC AAACCCCCCA TCACCATGCT TTATTTTTCC TTGAGAAAAA GACCTCAGAA ATCAGATGTC TCAGCCGTAC ATATATATGT AT |
| Length | 1682 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11550378.. 11554050 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G16144.1 |
| Description | associated molecule with the SH3 domain of STAM 3 |
| TAIR curator summary | Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. |
| Alias | [AMSH3][associated molecule with the SH3 domain of STAM 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg483631 | PLAC8 family protein |
| 9.48683 |
Ahg936878 | Transducin family protein / WD-40 repeat family protein |
| 12.5698 |
Ahg474191 | scarecrow-like 5 |
| 13.4164 |
Ahg319882 | RPM1 interacting protein 13 |
| 14.4914 |
Ahg479633 | alpha-mannosidase 2 |
| 19.5959 |
Ahg481579 | proteasome family protein |
| 19.975 |
Ahg478178 | Protein kinase superfamily protein |
| 37.47 |
Ahg485135 | ATP-binding cassette A2 |
| 39.3446 |
Ahg485242 | RNI-like superfamily protein |
| 41.4608 |
Ahg474468 | Plant protein of unknown function (DUF641) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|