| Annotation |
|---|
| Description | jgi|Araly1|493886|fgenesh2_kg.7__3319__AT5G40890.1 |
| Sequence |
CTCCTCACAA CAAATAAAAT TCAAATTAAA TGTTATGTAA TGGTGTATAT TAATGATGCA TGCATGTATC ATATGTGATT ATATGTAGAG AGATCTATAA AGCTTCAAAA GAGTGTTTCC TCTAGAAAAA ACGACAAAAT TCACAGAGAA ATCCAAACCA AAAGTAGTTT TGTAACAGAG AGATATATAG AAAGCTCTTG AAGATCTAAC CAAAATCTAC TTTTGTTGTT CTTCTTTTTT TCCTATATTT TCTGAGTGGT CCTCTATATT GTCACTTGGA TCATTAGAGA GGGAGTTACC GATGGATGAA GATGGAAACT TGCAGATTAG TAATAGTAAT TACAATGGAG AAGAAGAAGA AGAAGGAGAT CCAGAGAACA ACACTTTGAA CCAACCTCTC CTTAAGAGAC ATAGAACTCT TTCTTCAACT CCTCTTGCTT TGGTCGGTGC CAAGGTTTCA CACATCGAGA GTTTAGATTA TGAAATAAAT GAGAATGATC TGTTCAAGCA TGACTGGAGA AGCAGATCAA AAACACAAGT GTTTCAATAC ATATTTCTAA AATGGACATT AGCTTGTCTT GTTGGTCTCT TCACTGGTCT TATCGCTACT CTCATCAACC TCGCTATCGA AAACATCGCC GGTTACAAAC TTCTCGCCGT AGGCTACTAC ATCGGTCAAG ATAGGTTTTG GACAGGTCTG ATGATCTTTA CGGGGGCAAA TTTGGGTCTG ACTTTGGTGG CGACAGTACT TGTTGTTTAC TTTGCTCCTA CGGCCGCTGG TCCCGGAATT CCTGAGATTA AAGCTTATCT TAATGGCATT GACACTCCCA ATATGTTTGG TTTTACCACC ATGATGGTTA AGATTGTTGG AAGTATTGGA GCGGTTGCAG CTGGACTTGA TCTTGGTAAA GAAGGGCCTT TGGTTCATAT TGGAAGCTGC ATTGCTTCTT TGCTTGGTCA AGGTGGTCCA GATAATCACA GAATCAAGTG GAGATGGCTT CGTTACTTCA ACAACGATAG AGATCGAAGA GATCTTATTA CCTGTGGATC TGCCTCTGGA GTATGTGCAG CTTTCAGGTC ACCAGTAGGA GGAGTGCTTT TCGCACTTGA GGAAGTTGCT ACGTGGTGGA GAAGTGCTCT CTTGTGGAGG ACATTCTTCA GTACAGCCGT TGTGGTGGTT GTACTGAGAG CATTCATTGA AATTTGTAAT TCCGGGAAAT GCGGGCTTTT CGGCTCAGGA GGACTCATTA TGTTTGATGT AAGTCATGTA GAGGTTAGGT ACCACGCAGC TGATATAATC CCGGTCACAC TGATTGGAGT CTTTGGTGGC ATTCTTGGAA GCTTGTACAA TCATCTTTTG CATAAAGTTC TCCGGCTTTA CAATCTCATC AATCAGAAGG GTAAGATTCA CAAGGTGCTT CTAAGTCTTG GGGTATCTCT ATTTACCTCG GTTTGCTTGT ACGGTCTTCC TTTCTTGGCG GAATGCAAGC CTTGTAATCC TTCGATAGAC GAGATGTGTC CAACAAATGG AAGATCAGGA AACTTCAAGC AATTCAACTG TCCAAATGGT TATTACAACG ATCTAGCTAC TCTGCTTCTC ACAACCAATG ATGATGCAGT CAGAAACATT TTCTCTTCAA ACACTCCTAA TGAGTTTGGT ATGGTTTCTC TCTGGATATT CTTTGGCCTC TACTGCATTT TGGGTCTTAT CACATTCGGT ATAGCGACAC CATCGGGTCT CTTCCTACCG ATTATCCTCA TGGGTTCTGC ATACGGTCGG ATGCTAGGCA CAGCAATGGG ATCTTACACA AACATAGATC AAGGGCTTTA CGCGGTTCTT GGTGCAGCTT CACTCATGGC TGGTTCAATG AGAATGACAG TTTCACTCTG TGTTATATTC CTTGAACTCA CCAACAACCT TCTTTTGTTA CCCATTACAA TGTTTGTGCT TCTGATAGCT AAAACAGTTG GAGACAGCTT CAATCTAAGT ATCTACGAGA TCATTCTCCA TCTAAAGGGC TTACCGTTCT TGGAAGCAAA TCCAGAGCCA TGGATGAGGA ATCTCACTGT AGGTGAGCTT AACGACGCTA AGCCTCCGGT TGTAACACTT AACGGAGTAG AGAAAGTCGC GAATATAGTC GATGTACTAA GGAACACAAC GCATAACGCA TTCCCAGTCT TGGATGGAAC AGATCAAACC ACTGGTACAG AGCTCCATGG TCTGATCCTA AGAGCTCACC TTGTGAAAGT TCTGAAAAAG AGATGGTTCT TGAATGAGAA AAGGAGAACA GAAGAATGGG AAGTTCGGGA AAAGTTCACA CCGGTTGAAT TAGCTGAGAG AGAAGATAAT TTCGACGATG TTGCAATTAT AAGCTCAGAG ATGCAATTGT ATGTTGATCT TCATCCTTTG ACCAACACTA CACCTTACAC AGTGGTGCAG AGTATGTCAG TGGCTAAAGC TTTGGTGCTG TTCCGGTCAG TGGGTCTCAG ACATTTGCTG GTTGTTCCCA AGATTCAAGC TTCAGGGATG TCACCTGTGA TAGGGATCTT AACAAGGCAA GATCTAAGGG CTTATAACAT TCTACAAGCA TTTCCTCACT TGGATAAACA CAAAAGTGGA AAACTTCGAT GAATAAGCCA AAACTGCAAA GAAGGTTCGC TATTACTTGG TTTGTGTGAT TTGTGTTTTC TTTCCACATT CTTAGTTTAT ATATATTCTG TCCAGTTTTG CTTGCATTCT TTCTTCAAGA CCAAAAAAAC AAATTATACT ATTTGGTAGA TTTGTGTGTT TCTACTTGTA AATCTCTATT TTTTTCCCCA CATTACGAGT TCTAAAGAAG AATAAAAACA ATTTGCATAC AGAACAAAAC TTTGAAGGTT CCATGGTGTT |
| Length | 2890 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 20583021.. 20587036 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G40890.1 |
| Description | chloride channel A |
| TAIR curator summary | Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. |
| Alias | [ATCLC-A][ATCLCA][CLC-A][CLC-A][CLCA][chloride channel A][CHLORIDE CHANNEL-A][CHLORIDE CHANNEL A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg920058 | Glycosyl hydrolases family 32 protein |
| 1.41421 |
Ahg479421 | |
| 2.23607 |
Ahg932963 | Major facilitator superfamily protein |
| 6.7082 |
Ahg475942 | |
| 8 |
Ahg944453 | cyclase associated protein 1 |
| 8 |
Ahg907175 | Glycosyl hydrolases family 32 protein |
| 9.16515 |
Ahg490864 | LOB domain-containing protein 39 |
| 11.6619 |
Ahg496854 | LOB domain-containing protein 37 |
| 16.1555 |
Ahg491143 | plasma membrane intrinsic protein 3 |
| 16.2481 |
Ahg347509 | Leucine-rich repeat (LRR) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|