| Annotation |
|---|
| Description | jgi|Araly1|494279|fgenesh2_kg.8__95__AT5G47010.1 |
| Sequence |
ATGGATTCTC AACAGAGCGA TCTCTTTGAC ACCGCATCGC AGCCGGACGC GGTGGCTGAC GCGTATACCT TTTTGGAATT CAATACTCAA GGCGATTCAG AGTTCGATTA CCCGGATTTT CGATCACCGA CGGCATGGCC GACACCTTCT GATTCCATTT CCATCGCTGA CGTTTCCGAT CGTGGTGGAG GAGGAGCTGC CGCGGATCAT CATTCCGAGG CTTCGTCACC TTCTTCTCTC TCTGCCGGTG CCGGAAATGG TGCCAAAGTT GGACGTGGTG GAGTTGGTGG AAGTGGTGGT GTTAGTAGTA GTAGTCAGGT TGATGCATTG GCCGCTGGTA TGGGAAATTT GAACTTTGAG GAGACTGGTG ATGATGATGG TTTTGATTAT GGTAAGAATG ATTTCACGGA GCACGCTTGT AAGTATTGTG GTATCTCGAA CCCAGCTTGC GTTGTTAGGT GTAATGTGGC TTCTTGTAGA AAGTGGTTCT GCAATTCAAG AGGAAACACC TCAGGCTCTC ATATTGTGAA TCACCTGGTT CGAGCAAAGC ACAAGGAAGT TTGTCTCCAT AGAGACAGTC CGCTAGGGGA AACAATTCTC GAATGCTATA ACTGTGGGTG TCGAAATGTC TTTCTTCTCG GTTTCATCTC AGCAAAGACA GACAGTGTTG TCGTCCTTCT CTGTAGAGAT CCTTGTTTAA ATGTAAATGC CTTGAAGGAT ATGAACTGGG ACCTAAGTCA GTGGTGTCCC TTGATTGACG ATAGATGTTT CCTCCCCTGG CTTGTTAAGG TCCCATCAGA GCAAGAACAG CTGAGGGCAC GCCAAATTAG CGCACAGCAA ATAAACAAGA TAGAGGAATT ATGGAAGACA AATCCGGATG CTACTCTTGA AGACCTTGAA AAACCTGGTG TAGATGATGA ACCTCAGCCT GTTCAACCTA AGTATGAAGA TGCATATCAG TATCAAAATG TGTTTGCACC TCTAATCAAA CTCGAAGCAG ACTATGACAA GATGATGAAA GAGTCTCAAA GCAAGGAAAA TCTCACTGTT CGGTGGGATA TTGGTCTTAA CAAGAAGCGC GTTGCATACT TCGTCTTCCC AAAGGAGGAA AATGAATTGC GATTGGTACC GGGTGATGAA CTACGTCTGC GCTACTCGGG AGATGCTGCT CATCCAGCCT GGCAGTCAGT TGGACATGTG ATCAAGCTAA CCGCACAAGA GGAGGTTGCT CTTGAACTCC GAGCTAACCA GGGAGTTCCG ATTGACGTTA ACCATGGATT CAGTGTTGAT TTTGTTTGGA AAAGTACAAG CTTTGATCGA ATGCAGGGAG CAATGAAGAA TTTTGCTGTA GATGAAACAA GTGTGAGTGG TTATATCTAC CATCAGTTAT TGGGACATGA AGTTGAGGCC CAGATGGTTC GTAACACACT ACCTCGACGT TTTGGGGTAC CTGGTCTTCC AGAACTGAAT GCATCTCAGG TTAATGCGGT GAAAAGTGTC CTTCAGAAGC CCATCAGCTT GATCCAAGGT CCTCCTGGCA CAGGCAAAAC TGTGACTTCT GCAGCAATTG TGTACCATAT GGCAAAACAG GGCCAGGGAC AGGTTCTTGT TTGTGCCCCA AGTAATGTTG CTGTAGACCA ACTAGCTGAA AAAATTAGTG CTACTGGGTT AAAGGTTGTT CGCCTTTGCG CAAAATCAAG GGAAGCTGTA AGTTCTCCTG TAGAGCATTT GACCCTTCAC TACCAGGTAA GACATCTTGA CACATCTGAG AAGAGCGAAC TGCATAAGCT GCAGCAGTTG AAAGATGAAC AAGGTGAGCT GTCAAGCAGT GATGAAAAGA AATACAAAAA TTTGAAAAGA CAGACAGAAC GCGAGATAAC CCAGAGTGCT GATGTCATAT GCTGCACATG TGTTGGTGCT GCTGATCTTC GGTTGTCAAA CTTTAGATTT AGACAGGTAC TTATTGATGA GTCTACTCAA GCAACAGAAC CTGAGTGCCT CATCCCTTTG GTCCTTGGAG TAAAACAGGT TGTTCTTGTT GGTGATCATT GTCAGCTTGG CCCCGTCATT ATGTGCAAGA AAGCAGCTCG TGCTGGCTTG GCACAGTCTC TCTTTGAACG CCTTGTGCTT CTTGGTATTA AACCAATCAG ATTGCAGGTT CAATACCGTA TGCATCCAGC TTTGTCCGAG TTTCCATCCA ACAGCTTCTA TGAAGGAACA CTACAGAATG GAGTCACAAT TATTGAAAGG CAAACAACAG GGATTGATTT CCCATGGCCT GTTCCTAACC GGCCCATGTT TTTCTATGTT CAGCTGGGAC AAGAGGAGAT CAGTGCTAGT GGAACATCAT ATCTTAATAG AACTGAGGCT GCTAATGTGG AGAAACTTGT GACTGCTTTC TTAAAGAGTG GAGTTGTCCC CAGTCAGATT GGAGTTATAA CTCCATATGA GGGACAGAGG GCTTACATTG TGAATTACAT GGCAAGAAAT GGTTCTCTCC GACAGCAACT TTACAAGGAA ATTGAGGTTG CCAGTGTTGA TTCTTTTCAA GGAAGGGAAA AAGATTACAT CATATTGTCC TGTGTGAGAA GTAATGAGCA TCAGGGCATT GGATTCCTTA ATGATCCACG GAGGCTCAAT GTTGCACTTA CGCGTGCTCG TTATGGAATT GTTATTCTTG GAAACCCAAA AGTTCTTAGT AAACAGCCTC TGTGGAATGG ATTGTTGACA CATTACAAGG AACATGAGTG CTTGGTCGAG GGACCTCTTA ATAATCTAAA GCAGAGCATG GTACAGTTTC AGAAACCAAG AAAGATTTAC AATGATCGGA GACTATTTTA TGGTGGTGGC GCTGGCATGA TTGGAAATGA TAATTTTGGT TCGGGTAACC CTAATGCTGA CAGAAGAGGC AGTCGAGGAA GGGCTGGTGG TTCGTATCTT CCTTCTGGCC CACCTAATGG TGCTAGACCT GGACTACACC CAGCAGGCTA CCCGATACCT AGGGTTCCAC TCTCACCCTT TCCTGGTGGT CCTCCTTCTC AGCCATACGC TATTCCAACT CGTGGACCTG TTGGTGCTGT TCCTCATGCT CCCCAACCTG GAAACCATGG TTTTGGAGCT GGTCGTGGAA CTTCTGTTGG GGGCCACCTT CCACACCAAC AAGCCACCCA ACATAATGTT GGAACTATTG GCCCAAGTTT AAACTTTCCC CTTGATAGTC CGAATAGCCA GCCTTCACCT GGTGGTCCGC TATCCCAACC TGGATATGGT AGCCAAGCGT TCAGGGATGG ATTTTCTATG GGTGGCATAT CTCAGGATTT CTTGGGTGAT GATTTCAAGA GCCAGGGATC TCATGTTCCT TACAACATGG CCGACTTTTC TACACAGGCC TCACAGGGTG GATATGCTGT TGATTATGCC ACACAAGGAG CACATGGGGC GTTTCCTGGA AATTTTATGA ATCAAAATTC TCAAGGCGGT TATTCCCGTT TCAGCGGAAA TAATGATTTC ATGTCTCAGG AGTATATGGC ACATGGAGGT CAAGGTCTTT TCACCCAAGC CGGCTTTATC GATTCATCCC AGGATGATGG ACAGAATCCT TATGGTGTGA ACAATCCTAA TCTTCAGTCT CAGGGTCTCC CGAATTCGCT CTACTCGCAG CCATTCTCAC ACTACAACAC GCAGCCACTA AACCTTTCAG GCCCACAACA ATCTCAACCT AACCAGAGCT CACAAAACCC AAAACATCCT TACAATGGCT GAGGGTGAGA AAGACAAAAC TTGGATGCAA CGGGTTTATA AACTCTTTTG CAAATTCACC GGCTTGGTTC CATGCTATCA CGGCTCCAAA CAAACATCTG GTGACTTCCG GGTGCTTGCA AGATACACGC CTTTCTGGCT CGCTTAACGC AGCAAACAGG TAAATGGTTA TGCAGAGAAA CAGGTACCTA AGTAGTAGCC TGGGGAAAAA AGTCTTCGGT CCGTAAATCC TTTGGGCTTA TATGTTTTTA TTATTTATAT ACGCTCATAT GCTCTATTAT TGTAGTCAGA TATCTGAAGC CTACCCATAG TTAAAATTGG TGGTGGTGTT TGATGATGAA TATTGATATG ATTTACAAGT TCTTGCTTTA TTTGGTTTTT GATTTTTTTT CACGGTCTGT TTGGTCTGAA ATCATGATTT ATGTGCAAGT TTTGATATCA TTTTTTTTTG TGGCTTATGG GCTTTGTCCA ATCTGGAATT TGCTTTGG |
| Length | 4248 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 586697.. 594116 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G47010.1 |
| Description | RNA helicase, putative |
| TAIR curator summary | Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. |
| Alias | [ATUPF1][LBA1][UPF1][LOW-LEVEL BETA-AMYLASE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg940290 | mRNA splicing factor, thioredoxin-like U5 snRNP |
| 4 |
Ahg949543 | quinolinate synthase |
| 4.69042 |
Ahg487099 | NRAMP metal ion transporter family protein |
| 7.93725 |
Ahg478006 | multifunctional protein 2 |
| 8.48528 |
Ahg497125 | Chaperone DnaJ-domain superfamily protein |
| 9.43398 |
Ahg492243 | alpha/beta-Hydrolases superfamily protein |
| 11.1355 |
Ahg355153 | arabinose kinase |
| 11.9583 |
Ahg487692 | 51 kDa subunit of complex I |
| 15.4919 |
Ahg344346 | |
| 15.5885 |
Ahg485968 | 2-oxoglutarate dehydrogenase, E1 component |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|