| Annotation |
|---|
| Description | jgi|Araly1|495932|fgenesh2_kg.8__1748__AT5G58230.1 |
| Sequence |
CAGAAACGGA AGCGAGAAGT TAAAGAGATC TGTTTTAGGG TTTTGCTTTG TTCTTGTGGC GGGAATAACA AAGACATCGC CGAGATGGGG AAAGACGAAG AGGAAATGCG AGGTGAGATT GAGGAGCGAC TAATCAATGA AGAGTACAAG ATCTGGAAGA AGAACACTCC TTTCCTCTAC GATCTCGTTA TTACTCACGC CCTCGAGTGG CCTTCACTTA CTGTTGAATG GCTTCCTGAC CGTGAAGAAC CTTCCGGCAA AGACTACTCC GTTCAGAAGA TGATTCTCGG TACCCATACC TCCGAGAACG AGCCTAATTA CTTGATGCTA GCACAAGTTC AGCTTCCTCT TGACGATACC GAGAGTGAAG CTCGTCAGTA CGATGATGAC CGCTCTGAAT TTGGTGGCTT TGGCTGTGCT ACTGGAAAGG TGCAAATTAT CCAACAGATT AATCATGATG GCGAGGTTAA TCGAGCTCGC TACATGCCCC AAAACCCATT CATAATTGCT ACCAAGACAG TTAATGCGGA GGTCTATGTT TTCGATTACA GTAAGCATCC ATCTAAGCCT CCTCTTGATG GGGCTTGTAA TCCTGATTTA AAGCTTAGAG GTCACAGTTC TGAGGGATAT GGTCTCTCTT GGAGTAAGTT CAAGCAGGGT CATTTGCTCA GCGGCTCTGA TGATGCTCAG ATCTGCTTGT GGGATATTAA CGCTACTCCT AAAAACAAAT CCCTTGACGC TCAGCAGATC TTTAAGGCTC ATGAAGGCGT TGTGGAAGAT GTTGCATGGC ATCTGAGACA TGAATACCTG TTTGGATCCG TTGGAGATGA CCAATACCTT CTTATATGGG ATCTTCGTTC TCCTTCTGCC AGTAAACCAG TACAGTCTGT GGTTGCTCAT TCGATGGAGG TTAACTGCTT AGCCTTCAAT CCATTTAATG AGTGGGTTGT GGCAACAGGA TCAACTGACA AGACTGTTAA ATTATTCGAT CTACGGAAGC TAAGCACCGC TCTTCACACA TTTGATAGCC ACAAAGAGGA GGTTTTCCAA GTTGGTTGGA ACCCAAAGAA CGAGACTATC TTAGCCTCAT GTTGCCTTGG TAGAAGGCTT ATGGTTTGGG ACCTTAGCAG GATCGATGAG GAGCAGACAC TGGAGGATGC AGAAGACGGT CCACCTGAGC TGCTGTTTAT TCACGGTGGT CACACTAGCA AAATTTCAGA TTTCTCGTGG AACCCTTGCG AAGATTGGGT TATCTCCAGT GTTGCTGAGG ACAACATACT CCAAATATGG CAAATGGCTG AGAACATCTA TCATGATGAG GATGACGCTC CAGGTCCAGG GGAAGAACCA TCAAAAGCTT CTTAGCTTAT TATTTAGTAT CCAAAGCGAG CTGATCTTAT GGGACAGTAT TT |
| Length | 1412 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 17357769.. 17359792 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G58230.1 |
| Description | Transducin/WD40 repeat-like superfamily protein |
| TAIR curator summary | Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1. |
| Alias | [ATMSI1][MEE70][MSI1][ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1][MATERNAL EFFECT EMBRYO ARREST 70][MULTICOPY SUPRESSOR OF IRA1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.16515 |
Ahg903199 | HSP20-like chaperones superfamily protein |
| 9.94987 |
Ahg944608 | eukaryotic translation initiation factor 3K |
| 12.1655 |
Ahg488863 | staurosporin and temperature sensitive 3-like A |
| 13.8564 |
Ahg478846 | 20S proteasome alpha subunit E2 |
| 14.6969 |
Ahg489660 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 18.8414 |
Ahg942264 | Threonyl-tRNA synthetase |
| 19.0263 |
Ahg477251 | Pre-mRNA-processing-splicing factor |
| 22.9783 |
Ahg949667 | ubiquinol-cytochrome C chaperone family protein |
| 25.6905 |
Ahg486720 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| 28.1425 |
Ahg470757 | CCCH-type zinc fingerfamily protein with RNA-binding domain |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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