| Annotation |
|---|
| Description | jgi|Araly1|891524|Al_scaffold_0007_3510 |
| Sequence |
ATGGGAAACG GTATTAAGCT CGGTGAAAGA GGAAGACCCA ACAAGAAGAT CAAGTATGGT GGCAAGGATG ATCAAAAGAT GAAGAACATC CAAAACGCTG AAGATTACTA TGACGAAGAT GATGAAGATT CTCGTGATGG TGAACTTACT CTCTCGCTGT ATGGTGAAGG AGAAGAGAAG AAGAGGGATT TTACTAAACT GGAGTTGAAG CCAGATCATG TGAACAGGCC TTTGTGGGCT TGTGCTGATG GAAGGATTTT CTTGGAGACT TTTTCTCCTC TTTATAAACA AGCTTATGAT TTTCTTATCG CCATTGCTGA ACCTGTTTGC AGGCCTGAGT CAATGCACGA GTATAATTTA ACCCCACACT CGTTGTATGC TGCTGTTTCC GTTGGTCTTG AGACAGAAAC TATCATTTCT GTTTTGAATA AACTGTCTAA GACTAAGCTA CCCAAGGAGA TGATTGAGTT CATCCATGCT TCTACTGCTA ATTATGGGAA AGTGAAGCTC GTTTTGAAGA AGAATCGGTA TTTTATTGAA TCCCCATTCC CAGAGGTATT GAAAAGGCTT CTCAGTGACG ATGTTATTAA CCGAGCTAGA TTTTCTTCTG AGCCATATTA TGGCGGTGAT GGATTCACGA TCGGCAAAAC AAGCGGTGAA CTTGAAGCAG GACCCGGGGA GCTGTTGAAT GGAGCAGAAT TGGCAGCAGC AGCAGAAGAG AAAGAAACTC ACTCATTTGA GATAGACCCT GCACAGGTGG AGAATGTGAA GCAGCGTTGC TTACCAAATG CCTTGAATTA CCCTATGTTA GAGGAATATG ACTTCAGGAA CGACAATGTT AATCCCGATC TTGACATGGA ACTGAAGCCC CATGCACAAC CGAGGCCATA CCAGGAAAAA AGTTTGAGCA AAATGTTTGG GAACGGACGA GCAAGATCTG GGATTATAGT GTTGCCTTGT GGTGCTGGTA AATCTCTAGT TGGTGTTTCG GCAGCGGCTC GTATAAAGAA GAGTTGTCTT TGTTTGGCGA CGAATGCTGT CTCGGTGGAT CAGTGGGCCT TCCAGTTCAA GTTGTGGTCT ACTATAAGAG ATGACCAAAT ATGCCGTTTC ACTTCTGATA GCAAAGAACG ATTCCGTGGA AATGCTGGTG TTGTTGTGAC AACCTATAAT ATGGTTGCCT TTAGTGGTAA ACGATCTGAG GAATCAGAGA AGATTATAGA AGAAATGAGA AACAGAGAGT GGGGGTTGCT GCTCATGGAC GAGGTGCATG TGGTCCCGGC CCATATGTTT AGGAAAGTTA TCAGTATCAC AAAATCTCAC TGCAAGCTAG GACTGACAGC CACCCTTGTG AGAGAAGACG AAAGGATTAC AGATTTGAAC TTCCTCATTG GCCCGAAACT ATATGAAGCC AATTGGCTAG ATTTAGTTAA AGGAGGCTTT ATTGCAAATG TTCAGTGTGC TGAAGTATGG TGTCCTATGA CTAAAGAGTT TTTTGCAGAA TATCTGAAGA AAGAAAACTC CAAGAAAAAA CAGGCACTTT ATGTCATGAA CCCTAACAAG TTCAGAGCCT GTGAGTTTCT GATTCGTTTC CATGAACAAC AACGTGGGGA TAAAATCATT GTCTTTGCAG ACAATCTTTT TGCACTTACA GAGTATGCAA TGAAACTCCG GAAACCGATG ATTTATGGTG CAACCAGCCA TATCGAACGA ACCAAAATTC TCGAGGCATT TAAAACCAGT AAAGACGTGA ACACTGTCTT CCTGTCAAAG GTTGGTGATA ACTCTATAGA TATCCCTGAA GCGAATGTGA TTATCCAGAT TTCGTCACAT GCTGGTTCTA GACGTCAAGA GGCTCAGCGT TTGGGTCGTA TTCTTAGGGC TAAGGGTAAA CTTGAAGACA GAATGGCCGG TGGAAAAGAA GAGTACAATG CATTCTTCTA CTCACTTGTT TCGACAGATA CACAGGAAAT GTATTATTCA ACGAAAAGAC AACAGTTCCT GATTGACCAA GGTTACAGCT TTAAGGTTAT AACAAGCCTC CCACCTCCGG ACGCGGGTTC AAGCTTGAGC TACCACAGTC AAGAAGAACA ATTATCTCTT CTCGGAAAGG TGTTGAATGC TGGAGACGAT TTGGTCGGTT TAGAGCAACT CGAAGAAGAC ACAGACGGAA TGGCTTTACA AAAGGCGAGA CGAAGCATGG GATCGATGAG CTTAATGTCT GGTGCAAAAG GAATGGTCTA CATGGAATAC AACTCAGGCC GTCACAAATC CGGTCAACAA TTCAAGAAAC CTAAAGACCC AACCAAACGA CACAATCTCT TCAAAAAACG TTACGTGTGA |
| Length | 2340 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 20301928.. 20306358 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G41370.1 |
| Description | homolog of xeroderma pigmentosum complementation group B 1 |
| TAIR curator summary | Encodes XPB1, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. |
| Alias | [ATXPB1][XPB1][ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1][homolog of xeroderma pigmentosum complementation group B 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg480424 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 7.07107 |
Ahg927706 | Flavodoxin family protein |
| 8.24621 |
Ahg486071 | Melibiase family protein |
| 10.198 |
Ahg485533 | BCL-2-associated athanogene 4 |
| 10.247 |
Ahg495654 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 10.3923 |
Ahg472928 | histidine kinase 3 |
| 11.8322 |
Ahg470511 | NAD(P)-binding Rossmann-fold superfamily protein |
| 14.4914 |
Ahg928349 | UB-like protease 1A |
| 17.1464 |
Ahg485584 | Dihydrolipoamide acetyltransferase, long form protein |
| 17.2047 |
Ahg491819 | protein kinase family protein / WD-40 repeat family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|