Detail


ID : Ahg893696

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|893696|Al_scaffold_0006_1692
Sequence
ATGAACAACT CCACCAGACT CATCTCCCTC TTCTCTCCTC ATCCTCCTCC TCTCTTTCTC CTCCGTGGCA TCTACATCAC CCGCATAACC AATCTCCGCC GTTTCCACCG CCGGGCGTTT ACTCCTTCCT CCGTTGGCTC CAGCAATCGA TGTTCTTCCC GTCCTTTCGT GTCTTTGCCA CCGCTTATCC CCACGTTTCC CATTGGACGG TTCTACACTC AACAATTCCG TGTCTCCGCC GCAGATTTTG TTCCTTCTTA TCACCACCAC CAGCTACCTG AATGGACAGA GCTACTCCAA TCTCTTTCCC AAACTGGTTA CTTCTCAGAT TCCGGTTCAA TTTCCGGTTC AGAAAGTGAA TTCTTTCCCG GTTATCCTGA TGAACTTCTC CGTCCAGCTC TTGCTTGCCT ATCTCTAGCT CGTGATCGAC CAGAATTACT TGAAATGCTT TCGAAGAGAG ACGTTGAAGT GGTGGTGGAG AATGGGAAGC CATTTTTGTT TAGGGCTGGT CCAGATTCAC TTAAAAGATT GAGCCTTTAC TTAAGAAGTG GTCGTCAGGG TATTGGTAAG ATGATGGACA TGGAGAAGGC GAGTACAGTT GATTTGATGA GGCTTCTTTT GAGTTATGTT GTTGATGTTG CTTCTTCTGA GGAGAGCAAA CACCATAACC AAGAGATTAT GGAGTCATCG GTTCGTAACC TCTTGAGTCA GATAGCGAAG ATGAGCTTCC GTACTACTGA GCCGAATGTT CATGGCACTA TGCAAAATCA GTTCTCAGAT AGAGATGGAC AAGCAGTCGG GTCTTTTCAG AAGAACATTG AGATGAAACG TGGTGACTGG ATTTGCTTGA GGTGCAGTGG CATGAACTTT GCGAGAAATG TCAAATGCTT CCAGTGTGAT GAAGCAAGAC CGAAGAGACA GCTTACTGGT AGTGAATGGG AGTGTCCTCA ATGTGATTTC TACAATTACG GGAGGAATGT AGCTTGCTTA AGATGTGACT GCAAGCGACC CACGGACTCT TCACTCAATT CAACCAACTC TGGTTATTCA AATGATCCTG AACTTGAGAG AAGACTGGTC GAAAACGAAG AGAAAGCACA GAGGTGGTTT AGTAAAGTAG CACAGGGTGG TTCTGATCCA AACAGTGTTG ATACAGATGA AGATTTTCCA AAGATTATGC CTTTGAGGAA AGGAGTGAAT AGATATGTTG TTAGCACGAG GAAGACACCT CTTGAGAGAA GGTTGGCTAA TACTGAGAAC AGTGTAGCTA CAGATGGAAA CTCGAATAGG AACGATGGTA AGGCTTTGGG AAGTAAAACA AATAGGAGCT TGAATGAGAT TCTCGGTTCT TCATCTTCTT TGGCCTCTCG ATCTGATGAC AAAAATGTAT CTTCCAGTAG GTTTGAATCT TCCCAGGGAA TAAACACTGA TTTCGTCCCA TTCGTGCCAC TACCTTCAGA TATGTTTGCC AAGAAACCTA AGGAGGAAAC ACAGATAGGT CTGACTGACA ACAACAACGA AATGGATGGT GTCTCAGGCG GCAATCAAAA TGTCTATCAA AAGGACAAGT CAGATGCAAA TCTCTCTGGC AAAGAAAATA GCCTTGAAAA GGATGGTCAA GAATCAGAGG AACCTGCGAG GTGGTTCAAG AGGGTCACCG AACTGCACAA CGTTTCAGAC TTGGAAAGCA CAACACCGCA AGAGATTTCT CCTGATAAAA TGCCAATGCG AGAAGGAGAG AATCGGTTTG TGGTGAGTAG GAAGAAAGAC CGTTCGCTGA CTTCTCCAGC ATACAAGAGG CCTTCACAAG ATTCAGACTT TGTCCCCTTT GTCCCTTTCC CACCTGACTA TTTCGCCAAA GAGAAACAAC CCAAGGAACC AATAGATGCT ATTCCAGCTC CGGCAACAGT AAACGTTTCG AATGTAGTAC AACAAGAACC AAGAGATCCT TCAAGCAACA AATCCGAAAT AGTGGCAGGG AGTATCAGAA ATGGAAAGAG CTTGGAGGGT TCGTTAGTGA AGGAGCCCGA CTTGTTGGAC ATGTCAGAGG AAGCAAAAGC GGAGAGATGG TTTAAGAGAG TGGCTGAGAT TAAGAACATA TCAGAGCTGA GTCAGATCCC AGACGAAGAT TTCCCATCAA TAATGCCGAT GAGGAAAGGA GTGAATAGGT TTGTTGTCAG CAAGAGGAAG ACTCCCTTGG AACGGCGTTT AACTTCTCAA CGACACCAGA GAAATCCTCA GATCACCGAC TCTGATCCCA CGGTTAAAGG AGATAAATGA
Length2280
Protein Sequence
Protein Residue
Map Locationscaffold_6: 7010179.. 7012991
Download Sequence
A.thaliana
AGI-codeAT5G17790.1
Descriptionzinc finger (Ran-binding) family protein
TAIR curator summaryEncodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.
Alias[VAR3][VARIEGATED 3]
Gene coexpression
MR
MR Locus Description
3.87298 Ahg940624 P-loop containing nucleoside triphosphate hydrolases superfamily protein
14.2829 Ahg476825
16.7033 Ahg486108 Single-stranded nucleic acid binding R3H protein
20.5913 Ahg485156 L-galactono-1,4-lactone dehydrogenase
22.4499 Ahg920476 Cobalamin biosynthesis CobW-like protein
24.2487 Ahg355577 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
25.4165 Ahg478922 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
32.5115 Ahg482168 glutamate receptor 5
35.2136 Ahg477686 plastid transcriptionally active 3
36.8782 Ahg488288 Pseudouridine synthase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression