Detail



ID : Ahg900758

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|900758|Al_scaffold_0004_1408
Sequence
ATGTCTAGGC TAAACAAAGA CATTGATTCA GCATTTCACG GTGTTGGAAC TAAAAGTGGC TTGGAGATTT GGTGCATTTA TAATAATCAG CTTATTTCTA TCTCCAAGTC TTCTTTTGGA AAATTTCACT CTGGAAATGC ATATCTTGTT CTCAGAACGT TTTTGCGGAA GATCGAATCT CCCCAGTATG ATATTCACTA TTGGCTAGGA AATGATGCAA ATGAGGTGGA TTTAGTTTTG GCATCAGACA AAGCATTAGA GTTAGATGCA GCACTTGGAT GTTGTACGGT GCAATACCGT GAAGTTCAAG GTCAAGAGAC TGAGAAGTTT CTCTCTTACT TCAAACCTTG TATTATACCT GTTGAAGGCA AGTTTTCACC AAAAACTGGA TTGGTTGGCG AGACATACCA AGTTATTTTG CTAAGGTGCA AGGGAGATCA TGTTGTTCGT GTTAAAGAGG TGCCTTTTCT TCGGTCATCA CTGAACCATG ATGATGTGTT CATTCTTGAT ACTGCATCAA AAGTTTTTCT CTTTGCTGGT TGCAACTCAA GCACTCAGGA AAAAGCTAAA GCCCTGGAGG TTGTGGAGTA TATAAAGGAT AACAAGCATG ACGGAAGATG TGAGGTGGCG ACTATCGAGG ATGGAAAATT TTCAGGTGAT TCAGATTCTG GTGAATTCTG GTCTTTCTTT GGTGGTTATG CTCCCATTCC CAAGCTTCCA TCTTCAACCA CCCAAGAACA GACGCAGACT ACATATGCAG AATTGTTCTG GATAGATACT AAGGGAAATC TACATCCAAC TGGAACAAGT TCTTTGGACA AGGACATGCT TGAAAAAAAC AAATGCTACA TGCTGGACTG TTACAGTGAA GTATTTGTTT GGATGGGAAG AGCCACATCA CTTACAGAAA GAAAGACATC CATTTCATCC TCAGAAGAAT TTCTACGAAA GGAGGGACGC TGGACAACCA CAAGTTTAGT ACTTCTAACG GAAGGACTAG AAAATGCCAG ATTCAGGTCA TTTTTTAGTA AGTGGCCTCA GACCGTAGAG TCTAGCCTTT ACAATGAAGG TCGAGAAAAA GTGGCAGCGA TGTTCAAACA AAAAGGATAT GACGTTGATG AGCTTCCTGA TGAAGAAGAT GAACCTCTCT ACACAAACTG CCGAGACACC CTCAAGGTTT GGCGTGTAGA TGGTGATGAG GTCTCTATTC TCTCCATTCC TGACCAGACA AAGCTATTCA GCGGCGATTG TTATATTGTG CAGTACAAAT ATACTTATAA TGAAAGAACC GAACATCTTT TATATGTATG GATCGGTTGT GAAAGCATAC AGCAAGATAG AGCTGATGCC ATAACCAATG CAAGTGCCAT TGTTGGTTCA ACCAAGGGTG AATCTGTAAT GTGTCATATA TATCAGGGAG ACGAACCTTC TCGTTTTTTT CCAATGTTCC AGTCGCTGGT TGTTTTTAAA GGCGGTTTGA GTAGACGGTA CAAAATGTTT CTAGCAGAGA AGGAAAACGA AATGGAAGAA TATAATGAGA ACAAGGCTTC TCTTTTCCGT GTTGAAGGAA CAAGCCCAAG GAACATGCAA GCAATCCAAG TTAATCTAGT GGCAACCTCC TTGAACTCAT CCTACTCGTA CATTTTACAA TATGGAGCTT CTGCCTTCAC ATGGATTGGA AAACTTTCAT CAGACTCTGA TCATGATGTT CTTGACAGAA TGCTATATTT CCTTGATACA TCTTGTCAAC CGATATACAT CAGGGAAGGA AATGAACCAG ACACATTTTG GGATTTGCTT GGTGGTAAGT CAGAGTACCC AAAAGAAAGG GAAATGAGGA AACAAATAGA AGAACCACAT CTATTTACAT GTTCCTGCAG TTCAGGTAAT GATGTACTCA AGGTGAAAGA AATATACAAT TTCGTGCAAG ACGATTTAAC CACTGAAGAT GTATTACTGT TGGACTGCCA AAGTGAAGTA TATGTTTGGA TTGGATTAAA CTCAAACATA AAGTCCAAGC AAGAAGCTCT TACTCTTGGT CTGAAATTCC TAGAGATGGA TATTCTGGAA GAAGGTCTAA CCGTGAGGAC TCCTCTATAT GTTGTCACAG AAGGCCACGA GCCACCATTC TTCACCCGTT TCTTTGAGTG GGTTCCTGAA AAGGCAAACA TGCATGGTAA TTCATTTGAA AGGAAACTTG CTAGTCTGAA AGGAAAGAAG ACAAGCACTA AGAGATCTAG TGGAAGCCAG TGGAGACCAC AGTCGAAGGA TAATGCATCA CGTGATTTAC AAAGTCGATC TGTGAGCTTA AACGGATCGG AGCGAGGAGT ATCACCTTGC TCCAGCGAAA AGCTTTCGAG ATTGAGCTCT ACAGAAGACA TGACAAGCAG CAGCAACTCA ACTCCAGTTG TCAAAAAGCT TTTCTCAGAA TCTCTTTTAG TGGATCCTAG TGATGGATTG GCGAGACAAG AGTCAAGCTC CAAGTCGGAC ATTTCTAATC AAAATCCAGT CGGTGGAATC AATCGCGATC TTAGTAGTCT AGAGTCGCTT ACATATTCAT ATAAACAGCT CAGAGTTGAT TCTCAGGAGC CAGTGTCAAA TATAGATGCA ACAAGAAGAG AGGCGTACTT AACAGAGAAA GAGTTTGAAG AGAGATTTGG AATGGCGAAA TCTGAGTTCT ATGCACTTCC AAAATGGAAA CAGAATAAAC TTAAAATATC TCTTCATCTT TTCTAA 
Length2736
Protein Sequence
Protein Residue
Map Locationscaffold_4: 13085356.. 13090368
Download Sequence
A.thaliana
AGI-codeAT2G29890.3
Descriptionvillin-like 1
TAIR curator summaryEncodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.
Alias[ATVLN1][VLN1][villin 1]
Gene coexpression
MR
MR Locus Description
3 Ahg476935 putative protein kinase 1
4.89898 Ahg492139
32.3265 Ahg477950 HCO3- transporter family
39.5474 Ahg479268 receptor-like kinase 902
44.9889 Ahg496973 GATA transcription factor 5
46.1736 Ahg487399 Transducin/WD40 repeat-like superfamily protein
48.156 Ahg918929 cellulose synthase-like D5
50.7149 Ahg485694 Pectin lyase-like superfamily protein
51.9615 Ahg932988 Cyclin B1;4
52.2303 Ahg321364 Leucine-rich repeat protein kinase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression