Annotation |
Description | jgi|Araly1|900758|Al_scaffold_0004_1408 |
Sequence |
ATGTCTAGGC TAAACAAAGA CATTGATTCA GCATTTCACG GTGTTGGAAC TAAAAGTGGC TTGGAGATTT GGTGCATTTA TAATAATCAG CTTATTTCTA TCTCCAAGTC TTCTTTTGGA AAATTTCACT CTGGAAATGC ATATCTTGTT CTCAGAACGT TTTTGCGGAA GATCGAATCT CCCCAGTATG ATATTCACTA TTGGCTAGGA AATGATGCAA ATGAGGTGGA TTTAGTTTTG GCATCAGACA AAGCATTAGA GTTAGATGCA GCACTTGGAT GTTGTACGGT GCAATACCGT GAAGTTCAAG GTCAAGAGAC TGAGAAGTTT CTCTCTTACT TCAAACCTTG TATTATACCT GTTGAAGGCA AGTTTTCACC AAAAACTGGA TTGGTTGGCG AGACATACCA AGTTATTTTG CTAAGGTGCA AGGGAGATCA TGTTGTTCGT GTTAAAGAGG TGCCTTTTCT TCGGTCATCA CTGAACCATG ATGATGTGTT CATTCTTGAT ACTGCATCAA AAGTTTTTCT CTTTGCTGGT TGCAACTCAA GCACTCAGGA AAAAGCTAAA GCCCTGGAGG TTGTGGAGTA TATAAAGGAT AACAAGCATG ACGGAAGATG TGAGGTGGCG ACTATCGAGG ATGGAAAATT TTCAGGTGAT TCAGATTCTG GTGAATTCTG GTCTTTCTTT GGTGGTTATG CTCCCATTCC CAAGCTTCCA TCTTCAACCA CCCAAGAACA GACGCAGACT ACATATGCAG AATTGTTCTG GATAGATACT AAGGGAAATC TACATCCAAC TGGAACAAGT TCTTTGGACA AGGACATGCT TGAAAAAAAC AAATGCTACA TGCTGGACTG TTACAGTGAA GTATTTGTTT GGATGGGAAG AGCCACATCA CTTACAGAAA GAAAGACATC CATTTCATCC TCAGAAGAAT TTCTACGAAA GGAGGGACGC TGGACAACCA CAAGTTTAGT ACTTCTAACG GAAGGACTAG AAAATGCCAG ATTCAGGTCA TTTTTTAGTA AGTGGCCTCA GACCGTAGAG TCTAGCCTTT ACAATGAAGG TCGAGAAAAA GTGGCAGCGA TGTTCAAACA AAAAGGATAT GACGTTGATG AGCTTCCTGA TGAAGAAGAT GAACCTCTCT ACACAAACTG CCGAGACACC CTCAAGGTTT GGCGTGTAGA TGGTGATGAG GTCTCTATTC TCTCCATTCC TGACCAGACA AAGCTATTCA GCGGCGATTG TTATATTGTG CAGTACAAAT ATACTTATAA TGAAAGAACC GAACATCTTT TATATGTATG GATCGGTTGT GAAAGCATAC AGCAAGATAG AGCTGATGCC ATAACCAATG CAAGTGCCAT TGTTGGTTCA ACCAAGGGTG AATCTGTAAT GTGTCATATA TATCAGGGAG ACGAACCTTC TCGTTTTTTT CCAATGTTCC AGTCGCTGGT TGTTTTTAAA GGCGGTTTGA GTAGACGGTA CAAAATGTTT CTAGCAGAGA AGGAAAACGA AATGGAAGAA TATAATGAGA ACAAGGCTTC TCTTTTCCGT GTTGAAGGAA CAAGCCCAAG GAACATGCAA GCAATCCAAG TTAATCTAGT GGCAACCTCC TTGAACTCAT CCTACTCGTA CATTTTACAA TATGGAGCTT CTGCCTTCAC ATGGATTGGA AAACTTTCAT CAGACTCTGA TCATGATGTT CTTGACAGAA TGCTATATTT CCTTGATACA TCTTGTCAAC CGATATACAT CAGGGAAGGA AATGAACCAG ACACATTTTG GGATTTGCTT GGTGGTAAGT CAGAGTACCC AAAAGAAAGG GAAATGAGGA AACAAATAGA AGAACCACAT CTATTTACAT GTTCCTGCAG TTCAGGTAAT GATGTACTCA AGGTGAAAGA AATATACAAT TTCGTGCAAG ACGATTTAAC CACTGAAGAT GTATTACTGT TGGACTGCCA AAGTGAAGTA TATGTTTGGA TTGGATTAAA CTCAAACATA AAGTCCAAGC AAGAAGCTCT TACTCTTGGT CTGAAATTCC TAGAGATGGA TATTCTGGAA GAAGGTCTAA CCGTGAGGAC TCCTCTATAT GTTGTCACAG AAGGCCACGA GCCACCATTC TTCACCCGTT TCTTTGAGTG GGTTCCTGAA AAGGCAAACA TGCATGGTAA TTCATTTGAA AGGAAACTTG CTAGTCTGAA AGGAAAGAAG ACAAGCACTA AGAGATCTAG TGGAAGCCAG TGGAGACCAC AGTCGAAGGA TAATGCATCA CGTGATTTAC AAAGTCGATC TGTGAGCTTA AACGGATCGG AGCGAGGAGT ATCACCTTGC TCCAGCGAAA AGCTTTCGAG ATTGAGCTCT ACAGAAGACA TGACAAGCAG CAGCAACTCA ACTCCAGTTG TCAAAAAGCT TTTCTCAGAA TCTCTTTTAG TGGATCCTAG TGATGGATTG GCGAGACAAG AGTCAAGCTC CAAGTCGGAC ATTTCTAATC AAAATCCAGT CGGTGGAATC AATCGCGATC TTAGTAGTCT AGAGTCGCTT ACATATTCAT ATAAACAGCT CAGAGTTGAT TCTCAGGAGC CAGTGTCAAA TATAGATGCA ACAAGAAGAG AGGCGTACTT AACAGAGAAA GAGTTTGAAG AGAGATTTGG AATGGCGAAA TCTGAGTTCT ATGCACTTCC AAAATGGAAA CAGAATAAAC TTAAAATATC TCTTCATCTT TTCTAA |
Length | 2736 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_4: 13085356.. 13090368 |
Download Sequence |
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A.thaliana |
AGI-code | AT2G29890.3 |
Description | villin-like 1 |
TAIR curator summary | Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. |
Alias | [ATVLN1][VLN1][villin 1] |
Gene coexpression |
MR |
MR | Locus | Description |
3 |
Ahg476935 | putative protein kinase 1 |
4.89898 |
Ahg492139 | |
32.3265 |
Ahg477950 | HCO3- transporter family |
39.5474 |
Ahg479268 | receptor-like kinase 902 |
44.9889 |
Ahg496973 | GATA transcription factor 5 |
46.1736 |
Ahg487399 | Transducin/WD40 repeat-like superfamily protein |
48.156 |
Ahg918929 | cellulose synthase-like D5 |
50.7149 |
Ahg485694 | Pectin lyase-like superfamily protein |
51.9615 |
Ahg932988 | Cyclin B1;4 |
52.2303 |
Ahg321364 | Leucine-rich repeat protein kinase family protein |
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RNA-seq |
Seasonal expression (July 2011 to June 2013) |
|
The four seasons |
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Growth Chamber expression |
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