| Annotation |
|---|
| Description | jgi|Araly1|904230|Al_scaffold_0003_1358 |
| Sequence |
ATGGCTTCTT CACCTGGTAA TACTAGCCCT CACAATCCTC CCCCGTTCGA TCTCAGTACT ATCTTCAAAC CCTCATCGAA CCCTTATCCT CCGCCTACAG GTCCTTTTCT TAACAATCAG CAACTCTACG CGCCGCCGGG TATCGCCGCC CAACCATCTC CGGTGAATCA AACGCAACAG GATGCGTCTT CCTCTTCCTC CGCTACTAAC TTGCAACCAC AGAGGACGCT CTCTTATCCC ACGCCACCTC TGAATCCCCA ATCTCCCCGT GTCAATCACA ATCCGGGAAC GCACATCCTC GCTCTCCTCA ACAATAACAA CAACGGAGGC GCCGTGGCTA ACCAGGAGCC GTCGCATCAG CTCCCGGTAG TGAATCACAA CGAGATCGCT CGGTCTTTTC CCGGCGGTTC GGGTCCTATT CGTGTTCCAA GCGGTAAAAT GCCCAAGGGA AGGCGATTGG TTGGTGAACA TGCGGTGTAC GATGTGGATG TGAGATTACA AGGTGAGATT CAGCCGCAGC TGGAGGTGAC TCCGATTACC AAATACGGGT CGGATCCTCA GCTTGTAGTC GGTAGGCAAA TCGCCGTCAA TAAGGTCTAC ATTTGCTATG GATTGAAAGG AGGAAACATA CGGGTTCTCA ATATCAACAC AGCATTAAGG TCTCTGTTCC GTGGACATTC TCAGAGAGTG ACGGACATGG CTTTCTTTGC CGAAGATGTT CATCTCTTGG CTAGTGTTAG TCTAGATGGA AAAGTTTTCG TGTGGAAAAT TTCCGAAGGA TCTGAGGGAG ATGATCAACC CGAGATAACT GGAAAGATCG TTCTTGCTCT TCAGATACTA GGAGAGGAAG ACACCAAACA TCCACGTGTT TGTTGGCACT GCCACAAACA GGAAATTTTG GTAGTTTCAA TTGGTAAACA TGTGCTGCGA ATTGATACCA CAAAAGTTGG CAGAGGTGAA GTATTCTCTG CTGAGGCACC ACTCCAGTGT CCCCTTGATA AACTGATTGA TGGTGTTCAG ATTGTGGGTA AGCATGATGG AGAAGTTACT GATTTGTCAA TGTGCCAATG GATGACCACG CGCCTGGTTT CTTCTTCAGT TGATGGCACG GTCAAGATAT GGCAAGATCG TAAGGCACAA CCACTTGTAG TTTTGAGACC TCATGATGGA CATCCAGTCA ATTCAGCCAC ATTTGTAACA TCCCCGGAAA GACCTGATCA CATCATACTT ATCACGGGGG GTCCTCTAAA TCGAGAAATG AAAATTTGGG TCTCAGCTGG GGAAGAAGGG TGGCTTCTAC CAGCTGATAC TGAATCATGG AGGTGTACCC AGACACTTGA TTTGAAAAGT TCATCTGAGC CACGAGCTGA AAAGGCATTT TTCAACCAAG TTATAGTATT GCCTGAAGCA GGCCTGCTTT TACTTGCAAA TGCGAGAAGG AACGCCATAT ATTCCGTGCA TTTGGACTAT GGCGCTTCTC CAGTTGATAC GCGGATGGAT TACCTGTCAG AGTTTACAGT GACTATGCCT ATATTGAGTT TTATTGGGAC AAATGATCAT CCAGAAGAAC CAATTGTTAA GGTTTATTGT GTTCAGACTC TAGCAATCCA GCAGTATACA GTAGACTTAT GCTTGTGCAT GCCACCTCCT AGAGAGAATG TGGGTTTTGA GAAGTCAGAT TCTAGTGTGT CACGGGAGGC AAACCTTGTT GAAAGCACGT CAGAACCATC TGGAATTAAG CCTACCGAAT TACCTTCAGC TGATTCAGTG CCTAAACCAT CTATTTTAGT GAATAGATCG GAAAGTGCTG ATACACTGAG TTTTCCAGCG GGTTCTGCAT CAGCAGAGAT CACACCACCA GCAATTGTTC CACCCAACGG TGATCCTAAA ACTTCTGGGA TGCCTTCTGA GACCAGTGAT ACAGGTTCTG CGTATGCTCC TTCACCTCAA CTGTCTCTAA GTCCCAGACT ATCAAGTAAA CTTTCTGGCT ATCACACTCC TGTAGAAGCA ATTGAGCAAG TACTACCACG TCATGAGCTT GGTGGGAAAA CAAGTTCTGC TGATTATTCT TATGATAGGC AAATTGATGA TGTTGGAGAA AGAAATTTGG ATGTGTCTTC TGTTGAGGAA AACTGTAGAA GAAAGGACAC GAATGTTACA CCTGATGATG ATTTGTCTGG GATTCAAAGC CCGTCAGCTT TTTTCAAACA CCCCACTCAT CTCGTAACTC CTTCAGAGAT ATTGATGGGC GTTTCGTCCA CTGAAGCCTC CATTGCTACT GAAGACAAGA GAGATAGAGA TGCAAATATT CAGGATGTGA ATAATGATGC AAGAGGCTTA GAAGTTGAGG TGAAAGAAGT AGGCGAAGCA CGGACTTCGC AGAATGGTGA AATCAACTAT CATGAAACAA CTGAGAATCA CACTTCAGAA AGTAGAGAAA ATATCTTCTG CTCACAGGTT TCAAATCTCA GCACTGAGAT GGCAAGAGAC CGTCATCCTA TTACAGAGGA CACTGTCATT CCAGGGGACT CTATGACTTA TGTACAACCT TTTCAATCTG GGGATGAAAG GGGTCTTGAC TCAAGAGATG TGTCTGCAAA GCTTCCTGAG TCGGGTTCAT CTAGTGGGCC TCTACAGTCG CCAGCTACGA CTAGCAAAGG GAAGAAGCAG AAGGCCAAAA ATTCACAGGG CCCCGGTTTG TCATCTACAT CCTCAAATGT TGCTAATCTG GCTGACTCCT TCAATGATCA AAGTCATCCC ATGACAGATT CACTTCCTCA GTTGTTAGCA ATGCAAGAAA CAATGAATCA GATAATGGCT TCGCAGAAGG AGATGCAGAG ACAACTATCA AATGCTGTCA CTGGCCCTAT CGTAAAAGAA GGTAAAAAAC TAGAAGTGGC CTTAGGAAGA ATGATTGAGA AATCCAGCAA GTCAAATGCT GATGCTCTAT GGGCCCGCTT CCAAGAGGAG GCTGTTAAGA ATGAAAAGGC ATTACGTGAC CATGGCCAGC AAATTGTGAA TGCAACGACA AACTTCATGA GCAAGGAGTT AAATGCCATG TTTGAGAAAA CGATGAAAAA GGAATTTGCT ATAGTTGGTC CAACCCTAGC ACGTGCAGTA ACTCCAGTTA TCGAAAAAAC TGTATCTTCT GCAATCACAG AGTCCTTCCA GAGAGGAATT GGCGACAAAG CAGTCAGTCA GCTTGAAAAA TCTGTTAATT CAAAGCTTGA AACAACCATA GCCAGGCAAA TTCAAGCCCA ATTTCAGACA TCTGGCAGAC AAGCCCTCCA GTTGTTGTAA |
| Length | 3300 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 5070659.. 5075038 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G13290.1 |
| Description | varicose-related |
| TAIR curator summary | |
| Alias | [VCR][varicose-related] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.74456 |
Ahg327182 | KH domain-containing protein |
| 6 |
Ahg901385 | Phosphoribosyltransferase family protein |
| 6.78233 |
Ahg471269 | S-locus lectin protein kinase family protein |
| 8.12404 |
Ahg938338 | Transducin/WD40 repeat-like superfamily protein |
| 10.9545 |
Ahg944752 | Protein of unknown function (DUF2012) |
| 11.7473 |
Ahg496360 | DCD (Development and Cell Death) domain protein |
| 12.1655 |
Ahg486740 | Carbohydrate-binding-like fold |
| 12.49 |
Ahg926502 | ARM repeat superfamily protein |
| 12.6491 |
Ahg900511 | |
| 13.2665 |
Ahg473899 | exocyst complex component sec3A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|