| Annotation |
|---|
| Description | jgi|Araly1|910808|Al_scaffold_0001_1062 |
| Sequence |
ATGGCGGGAT CTCTAACAGC ATCAACCCGC CGTGGAAACA CGGAGGCTTC TTCAGAAATT TACCGGTGGA TGATCGGTTT TGCTCGGTTT GTTCACTATC CATCTACTCC TTCTCAGTGT CCAGGTCTGA GACCTCTCGG AAGGAGAGAG CTGTATCATT CGCCCCACGG AACCTGGTTG TCGGCGTCTT CTTCGACGCT GTCTCTCCAG ATGTTCGACG AAGTCAACAG ATCCGATGTG ATTCTCTCCG TCAAACTCGG CGAGAAAGTC CTTGAAGAAC ACTACATTTC AAAGCTGAAT TTCACATGGC CTCAGATGTC ATGCGTTTCT GGGTTTCCAT CTCGTGGTAG TCGAGCGATT TTCGTTACCT ATAAGGATTC TGCAAACGAG ATCCAGAAAT TTGCTTTAAG GTTTTCCACA TGTGATGCAG CGTTGGAGTT TGTGGAAGCT CTTAAGGAGA AGTTTAAGGG TTTAGAGGAA GCTCGGAACC AGAGAAATGA AACTAGGTGT GAGGTGGTTT CTTTCCAGTC AGATTACAAC CCTTCAAATG CGATCATCCC CAGAGCCACT CAGAAAGAGC CAAATATGGT TAAACCTCGT AATAGTTATG TTCCTGAAAT GCAACCAAGA ATTGAGTATG AAGTTCAGAA CCAGAAAAGT GAAACTAGGT CCGAGGTTTC TTTCCAGACA GATTACAACC CTTCAAATGA GATTTTCCCC AGAGCCATTG AAGAAGAGCC AAATATGGTT AGATTTTTTG ATAGTTATGT TCCTGAAATG CAACCAAGAC CTGAGTATGA AACTGGAAGA GCCTTATATC CATCACAATC CACGCTAAAT CAAATCCCGA ATCTCCCTCC GAGTTTCACC TCCTTACTCT CTGGTTGCTT CCCTGACTCC ACTCTAGATG CAGGCCAAAC ACCTGTGAAG CAGGATCCTG ATCTAAAGTC ACAGATACTG AGGTACATGG AAGATTCTTC ATTTCAAGAT ATGCTGCAGA AAGTAGAGAG AATTATCGAC GAAATTGGAG ATCGATGTGC AGGTAGCACG ATAGGGAGAT CGAGCAAAAT CTATGTACCA TTGTGTTTCC ACGACAATTG CGTCCTGCCA TTTAAAAATG ATTGTTGGTG TTGTCTCGCA GCTGGAACTA AAAAAGATTG GTGTTGGGAA GAAAAAGATT ATCCGGACGC CAAAGAGCTT TGTATGAAAA CATGTACAAG AGTGGATGTA TTGGAGTAA |
| Length | 1239 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 4017837.. 4020934 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G10710.1 |
| Description | poor homologous synapsis 1 |
| TAIR curator summary | Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. |
| Alias | [PHS1][POOR HOMOLOGOUS SYNAPSIS 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.08276 |
Ahg490600 | MATE efflux family protein |
| 10.4881 |
Ahg940242 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| 21.0238 |
Ahg922994 | related to AP2 1 |
| 23.1084 |
Ahg497339 | AGAMOUS-like 31 |
| 27.4773 |
Ahg482814 | Protein of unknown function (DUF740) |
| 30.3315 |
Ahg343136 | UDP-glycosyltransferase 73B4 |
| 30.7896 |
Ahg315131 | beta vacuolar processing enzyme |
| 41.3521 |
Ahg940287 | serine carboxypeptidase-like 35 |
| 42 |
Ahg472914 | |
| 42.8486 |
Ahg926409 | conserved peptide upstream open reading frame 28 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|