| Annotation |
|---|
| Description | jgi|Araly1|922934|scaffold_104215.1 |
| Sequence |
AAGCTTTATT TTGTGTGAAG ATGGCGAATA ATCCTCCGCA GTCTTCTGGT GCTCAGCAGT TTCGGCCGAT GGCTCCTGGA CAGCAGGGTC AGCATTTTGT TCCTTCAGCT TCACAACCTT TTCACCCTTA TGGACATGTA CCTCCAAATG TTCAAAGTCA GCCTCCACAG TATTCTCAGC CGATACAGCA GCAGCAGCTC TTTCCTGTGA GACCAGGCCA GCCTGTGCAT ATTACATCAT CCTCACAGGC TGTATCAGTT CCGTATATTC AAACGAACAA GATTCTCACT TCTGGATCTA CTCAACCACA GCCAAATGCA CCTCAAATGA CGGGCTTTGC TGCATCTGGA CCTCCATTTT CTTCTCCATA TACTTTTGTA CCATCATCTT ATCCTCAGCA ACAACCAACA TCCTTGGTCC AACCAAATTC TCAGATGCAT GTAGCCGGCG TCCCTCCAGC AGCAAACACT TGGCCTGTTC CTGTAAATCA AAGTACCTCA CTTGTTTCTC CTGTGCAGCA GACTGGGCAA CAAACACCAG TCGCAGTTTC CACAGACCCA GGAAACTTGA CTCCGCAATC TGCATCTGAC TGGCAGGAGC ATACATCTGT TGATGGGAGA AAGTATTATT ATAACAAGCG GACGAAACAA TCAAATTGGG AAAAACCTCT TGAACTGATG ACACCACTTG AGAGGGCTGA TGCATCCACT GTATGGAAGG AATTTACAAC ACCTGAAGGA AAGAAATATT ATTATAACAA GGTTACAAAG GAGTCTAAGT GGACAATTCC GGAAGATTTA AAGTTAGCTC GGGAACAAGC CCAACTAGCT AGTGAAAAAA CGTCCCTTTC AGAAGCTGGA TCTACCCCTC TGTCCCACCA TGCTGCATCC TCGTCTGATC TAGCCGTTAG CACTGTGACT TCTGTTGTTC CCAGCACATC TTCAGCACTT CCTGGACATT CTTCAAGCCC TATTCAAGCG GGTTTGGCTG TACCTGTCAC TCGTCCTCCC TTTGTTGCTC CTGTCACTCC AACATCTGCT GCAACTAGTG ATACTGAGGC TTCTGCAATA AAACCCGATA ATTTACCTTC TCGGGGGGCA GATGATTCAA ATGATGGAGC TACAGCACAA AACAATGAGG CTGAGAATAA GGAAATGTCT GTGAATGGAA AAGCCAATTT GTCACCTGCT GGTGACAAAG CAAATGTCGA GGAACCTATG GTATATGCTA CTAAGCAGGA GGCCAAAGCT GCTTTCAAGT CTCTTTTGGA ATCTGTAAAT GTTCATTCCG ACTGGACATG GGAACAGACA TTGAAAGAGA TTGTTCACGA TAAAAGATAT GGTGCTTTGA GGACACTCGG TGAGCGGAAA CAAGCGTTTA ACGAGTATCT TGGTCAAAGG AAAAAAGTGG AAGCTGAGGA AAGACGAAGG AGGCAGAAGA AAGCTAGGGA AGAATTTGTC AAGATGCTAG AGGACTGTGA AGAACTTTCA TCATCCATGA AATGGAGCAA AGCAATGGGT TTGTTTGAAA ATGATGAGCG CTTTAAAGCT GTTGATCGTC CTAGGGATCG TGAAGATCTT TTTGACAATT ACATTGTGGA ACTTGAGAGG AAGGAAAGAG AAAAGGCAGC GGAGGAACAT CGGCAGCATA TGGCAGAGTA TCGGAAGTTT CTTGAAACCT GTGACTATAT CAAAGCTGGT ACACAATGGC GCAAAATTCA AGAGCGACTG GAGGATGACG AAAGATGCTC ATGTCTCGAA AAGATAGATC GTCTGATTGG TTTTGAGGAA TACATGCTTG ACTTAGAGAA GGAAGAGGAG GAGCAGAAGA GAGTAGAGAA AGAACATGTA AGGCGGGCCG AGAGAAAAAA CCGTGATGCA CTTCGTACAC TTTTGGAAGA ACATGTTGCT GCTGGCATCC TTACAGCCAA GACGTACTGG TTGGATTATT GCGTTGAGTT AAAAGACTTG CCCCAATACC AAGCTGTTGC ATCTAATACA TCTGGCTCAA CTCCGAAAGA CTTGTTTGAA GATATCACAG AAGAATTAGA GAAACAGTAT CATGAGGAGA AGAGTTACGT AAAGGAAGCT ATGAAGTCAA GGAAGATTTC CATGGTCTCC TCGTGGCTGT TTGAAGATTT TAAATCTGCT ATTTCAGAAG ATCTCAGTTC TCAACCGATA TCAGATATAA ATTTAAAGCT TATATATGAT GACTTGGTTG GGAGAGCGAA GGAAAAAGAA GAAAAAGAGG CTAGAAAGCT TCAGCGTCTG GCTGAAGAAT TTACCAATCT GTTGCACACT TTCAAGGAAA TAACCGCAGC TTCGAATTGG GAAGATAGCA AACAACTATT AGAAGAAAGT CAAGAGTACA GATCGATTGG AGATGAAAGT GTTAGCCAAG GGTTATTTGA GGAATACATA ACGAGTTTAC AAGAAAAGGC AAAGGAGAAG GAGCGTAAGC GTGATGAGGA AAAGGTTAGA AAAGAGAAGG AAAGGGACGA GAAAGAGAAA CGGAAAGACA AGGATAAGGA GAGAAGGGAA AAGGAAAGAG AACGTGAAAA AGAGAAGGGA AAAGAGAGGA GTAAACGAGA AGAATCAGAT GGTGAGACTG CTATGGATGT GAGCGAAGGT CACAAAGACG AGAAAAGAAA GGGAAAAGAT CGTGACAGAA AACATCGGAG ACGGCATCAC AATTCTGATG AAGATGTCAG TTCTGATAGG GATGACAGAG ATGAGTCGAA GAAGTCCTCT CGTAAACATG GTAATGATCG TAAAAAATCA AGAAAGCACG CAAACTCACC TGAATCAGAC AGTGAAAACC GGCATAAAAG ACAGAAGAAG GAGCAGCGGG AAAGTAGTCG TCGAAGTGGT CATGACGAGC TAGAGGATGG AGAAGTTGGG GAGGATGGTG AAATCCGACA TTAATCGCTG ACAAGTCGTA ACAAGTATTT |
| Length | 2950 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 21945077.. 21952206 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G44910.1 |
| Description | pre-mRNA-processing protein 40A |
| TAIR curator summary | Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. |
| Alias | [ATPRP40A][PRP40A][pre-mRNA-processing protein 40A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg493708 | Serine/threonine-protein kinase Rio1 |
| 6.63325 |
Ahg477718 | Nucleotidylyl transferase superfamily protein |
| 10.3923 |
Ahg488536 | SART-1 family |
| 11.4891 |
Ahg933395 | splicing factor PWI domain-containing protein |
| 14.2829 |
Ahg476840 | eukaryotic translation initiation factor 2 (eIF-2) family protein |
| 16.7332 |
Ahg479925 | KRR1 family protein |
| 19.5959 |
Ahg945006 | pathogenesis related homeodomain protein A |
| 23.8118 |
Ahg477121 | glyceraldehyde-3-phosphate dehydrogenase of plastid 1 |
| 28.8964 |
Ahg489545 | |
| 32.5883 |
Ahg487080 | importin alpha isoform 9 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|