| Annotation |
|---|
| Description | jgi|Araly1|945006|scaffold_701235.1 |
| Sequence |
TCTCGGTGAT CGGGAATTCG ATATGGAGGA GAGTGAAACA AAGGGGAGAA TCAATCAAGA AACTGAAAAG GCTTGTGTTT CAGTTGAGAG AATTGGGTCT ACTTTACTCT CATCATTTGT GAAGAAAGGT AAAGAAGTAC CAAATAAGAG AAACTTTAAG CCGAATAAGC GTAAAACGGA AGAAGATATC TGTTCGAAAT CCAGAAACAA GAAGTATTCT CGAGGATGGG TTCGTTGTGA GGAAATGGAG GAGGTGAGGG TTAAGAAAAC AAGGAAGAGG AAAAGTAAGA GACAGCAAAA GGATAATAAG GTTGAGGTAG ATGATTCGCT AAGGTTGCAG AGGCGGACAA GGTATTTGCT CATTAAGATG AAGATGCAGC AGAATCTTAT CGATGCATAC GCAACTGAAG GTTGGAAAGG TCAGAGCCGG GAAAAGATAA GACCAGACAA GGAGCTTGAG AGAGCCCGGA AACAGATCTT AAACTGCAAG CTTGGACTAC GCGACGCCAT TTGCCAGCTG GATCTGCTTA GTTCTGTGGG AAGCATGGAA GAGAAAGTGA TAGCTCCAGA TGGATCTATT CATCATGACC ATATATTTTG TGCGGTATGT AATTCTCGAG AAGCTTTTCC AGACAATGAT ATAATACTTT GTGATGGAAC GTGTAATCGA GCATTTCACC AGAAGTGCCT TGACCCTCCT TTGGAAACAG AAAGCATACC TCCCGGAGAT CTGGGTTGGT TTTGCAAATT TTGTGATTGC AAAATGGAAA TCATCGACAC AATGAATGCG CAAATTGGTA CCCATTTCCC TGTGGACAGC AACTGGCAGG ATATCTTCAA TGAAGAAGCT AGTCTTCCTA TTGGATCTGA AGCTACACTT AACAATGAAG CAGATTGGCC TTCGGATGAC TCCAAGGATG ATGATTATGA CCCTGAAATG AGGGAAACCG GTGGAGGAAA TAGCAGCAAC GTTAGTGGTG ATGGTGGTGG TGATAATGAT GGTGGTGGTG ATAATGATGG TGAAAGCATT TCAACCAGTT TGAGCTTATC TTCTGATGGT GTTGCCCTTT CAACGGGATC ATGGGAAGGC CATAGACTCA GCAATATGTT GGAACAATGT GAAACAAGTA ATGAAGAAAC TGTATGTGGG CCAAGACAGC GAAGGACTGT TGACTATACA AAGTTGTACT ATGAAATGTT TGGAAAGGAT GCAGTTTTGC AAGAACAAGG TAGTGAAGAT GAAGACTGGG GTCCGAATGA CAGAAGGAAG AGAAAAAGGG AATCTGATGC AGGAAGCACA CTTGTAACTA TGTGTGAAAG CAGTAAGAAA GATCAAGATG TTGTAGAAAC ACTGGAACAG AGTGAGAGAG ATTCTGTCTC TGTGGAAAAT AAAGGAGGTC GAAGGCCGAT GTTCAGACTC CCAAAATATG CAGTTGAGAA GCTACGTCAA GTATTTGCAG AGACTGAGCT TCCTACAAAA GCTGTGAGGG ATCGTCTTTC AAAAGAGCTG AGTCTTGATC CAGAGAAGGT CAATAAATGG TTCAAAAATA CACGGTATAT GGCACTGAGG AATAGGAAGA CTGGGAGCGT GAAACAACCT GGGGATTCTA AGACAGTCTC TGGAGGAGAA TCTGGACCAG AAGCAGTCAT GGAGAACAAC ACTGAAACTA ATCAAGTTCA AGATACTTTG GATATGACAG TTCCACCCGG ATTTAATGAT TCCGCTACAA ATCAGAAAAT TCTCTCTCCC TGTACTAACA ACCAGGAGGA AATTCAACAG GCCAATGTCT CCTTTCCTTC ACCCACAGAT GAAAGTCAAC ATTATCTGGA ACAAAACGAC TCTTCTTTCG CTCTAGTGCC ACATGAAGAG CTAAGCAGTG AAATGAGCTT AAAGACGGCC GTAGAGGAGA AGGAGACAGA GAGCAAGATG ACGGAAGAGC CACATGAAGA GCTAAGCAGC GAAATGATCT TAAAGACAGC GGTAGAGGAG AAGGAGACAG AGAGCAAGAT GATGGAAGTG CCACAGGAAG AGCTAAGATG TGAAACGAGC TTAAAGACAG CTGTAGAGGA GAAGGAGACA GAGAGCAAGA TGACGGAAGA GTCACATGAA GAGCTAAGCA ACGAAATGAG CTTAAAGACA GCTGTAGAGG AGAAGGAGAC GGAGAGAAAG ATGACGGAAG AGGAAGAATT TGAAGTAGTA ATGGAGATGC TTTGTAGAAC AGAAAACAAG TTACTTGACG TGACGCAGAG GCTTGAGAGA TTTAAAACAC CGAAAGGCCG GAAAAAGTTA GGCAAGTCTT CTTCTTCTTT AACTGAAGAA GACTCAGTAG TGTATGTTCC AATAGCAGAG ATCAAGGAGA AAAGGTAAAA ATATATATTA GAAAAAAA |
| Length | 2388 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 4722294.. 4726528 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G29940.1 |
| Description | pathogenesis related homeodomain protein A |
| TAIR curator summary | Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. |
| Alias | [PRHA][pathogenesis related homeodomain protein A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.47214 |
Ahg470975 | nuclear factor Y, subunit C9 |
| 8.3666 |
Ahg473745 | |
| 12 |
Ahg485198 | Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 |
| 14.2829 |
Ahg927067 | eukaryotic translation initiation factor 2 (eIF-2) family protein |
| 16.9115 |
Ahg490287 | Kinase interacting (KIP1-like) family protein |
| 19.5959 |
Ahg922934 | pre-mRNA-processing protein 40A |
| 19.6723 |
Ahg896721 | 5'-3' exonuclease family protein |
| 20.7846 |
Ahg323672 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 21.4942 |
Ahg495812 | DNA ligase IV |
| 21.8174 |
Ahg920352 | Mitochondrial substrate carrier family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|