Detail



ID : Ahg924122

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|924122|scaffold_105403.1
Sequence
TCTAAACGGG TATATGATCA AATGGATAGA AGATCTGAAA TGTTTGCTAT ATTCAATGAG GCTACTGCTG ACAACATAAT GTACAGTGTT ATCATTAGTG CTTTCCTTAA AGAAGGGCTG ACGACAAAAG CATTTGTGCT TGTAATTAGT GGTAGTAACA AGCATTTGAT AAATGGGAAG CTTGCACAAC CTAGTCAAGT CCAGAATCTT TTCCACTCTG TGCAGCTTAA TAATGTCAAC AATCCACACT TTCTCATCAT GCAAGGTAGA ATCACCAAAG TCTTAAACAT GAAACCTCCC GAGATACTGT GGGTGCTGGA ACAAGAATGT ATGAAAACAA GAAAGAAAGA ATGTTCAACA GTAGAGGAAG AAGAAGAAGA AGATGAGACA TGGAGGAGCG AGATAGTAAC AAGGGTGATG AGAATCGTGA GCACGAGATT GATCTTTTTT ACTCTGCTAC CTTGATGGTC TTGAGGTTCG TGTTT 
Length485
Protein Sequence
Protein Residue
Map Locationscaffold_1: 28128050.. 28145045
Download Sequence
A.thaliana
AGI-codeAT5G62410.1
Descriptionstructural maintenance of chromosomes 2
TAIR curator summarySMC2-1 (SMC2)
Alias[ATCAP-E1][ATSMC4][SMC2][TTN3][structural maintenance of chromosomes 2][TITAN 3]
Gene coexpression
MR
MR Locus Description
16.9115 Ahg940862
21.4243 Ahg932721
23.8328 Ahg492324 Fe superoxide dismutase 1
28.8444 Ahg476224 MLP-like protein 43
38.0657 Ahg918814 Heavy metal transport/detoxification superfamily protein
38.2099 Ahg940935 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
41.0853 Ahg490488 TRAF-like family protein
44.833 Ahg486064 copper chaperone
45.4313 Ahg474716 dehydrin family protein
48.734 Ahg486235 Cysteine proteinases superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression