Detail



ID : Ahg930053

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|930053|scaffold_302510.1
Sequence
GATTCAATCA ACTATCAAGC AATGGCATCG ATGACCATGA CTGCTACTTT CCTCCCGGCC ATCGCCAAGC TTCCCTCAGC CACCGGCGGA CGAAGGCTCT CGGTAGTCAG AGCCTCCACG AGCGACAACA CACCCAGCTT ACAAGTCAAG GAACAGTGCA GCACCACAAT GAGGAGGGAC CTCATGTTCA CGGCTGCAGC TGCAGCGGTT TGTTCTTTGG CTAAAGTAGC CATGGCTGAA GAAGAAGAGC CCAAGCGAGG GACAGAGGCG GCCAAGAAGA AATACGCACA AGTTTGTGTC ACAATGCCTA CGGCCAAGAT CTGCCGCTAC TGATTCAACA AACCACCTTC TTCATGCCTA TCCCTCTCTT TCAATTTCGG TAAATTTTCT CAATTAAGTT TGGTCTGTAA TCG 
Length413
Protein Sequence
Protein Residue
Map Locationscaffold_249: 2318.. 2730
Download Sequence
A.thaliana
AGI-codeAT3G21055.1
Descriptionphotosystem II subunit T
TAIR curator summaryEncodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc).
Alias[PSBTN][photosystem II subunit T]
Gene coexpression
MR
MR Locus Description
2 Ahg925563 ribosomal protein L14
6.32456 Ahg925562 ribosomal protein S8
7.93725 Ahg948644
9.59166 Ahg896591
14.7309 Ahg933705 glutathione peroxidase 2
19.7484 Ahg483038 eukaryotic translation initiation factor 2
29.7321 Virus1973
37.1483 Ahg952639 GDSL-like Lipase/Acylhydrolase superfamily protein
40 Ahg477481 conserved peptide upstream open reading frame 9
40.9512 Ahg928610 metallothionein 2A
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression