| Annotation |
|---|
| Description | jgi|Araly1|934787|scaffold_402775.1 |
| Sequence |
CAAAACACAA TTAAAAATTA TTATGAAGAG GAACGGCGAG ACGAAACGGC GGAGGAACGT GGCGGAGGAA GCAGAGCAGG GAGGAGGAGG AGAAGATCCA GCGATGTGGG AGAATCTTGA CCGGAATTTC AGACAAGTGC AATCAGTTTT GGACAGAAAC AGATCACTGA TTCAACAAGT CAACGACAAT CACCAATCGA GAATGGCTGA TAACATGTCG AAGAACGTTG CTTTGATTCA AGAACTCAAC GGAAACATTT CCAAGGTTGT TAACATGTAT TCTGATCTCA ATACTAGTTT CTCATCGGGG TTTCACGGTG GAAAGAACGG TCACGACGGT GGTGGTGCTG CCGGAACAAG AGCTTAATGA ACCCGAATCA AATTGTTT |
| Length | 388 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_301: 5767.. 6158 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT2G40080.1 |
| Description | Protein of unknown function (DUF1313) |
| TAIR curator summary | Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. |
| Alias | [ELF4][EARLY FLOWERING 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.24621 |
Ahg485038 | Homeodomain-like superfamily protein |
| 8.24621 |
Ahg491275 | |
| 16.4317 |
Ahg356828 | cold regulated gene 27 |
| 19.6469 |
Ahg490342 | sucrose synthase 3 |
| 22.0454 |
Ahg497163 | nitrate transporter 1.7 |
| 23.1301 |
Ahg952367 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| 24.1247 |
Ahg475919 | flavin-binding, kelch repeat, f box 1 |
| 24.6779 |
Ahg496297 | CCT motif -containing response regulator protein |
| 32.0312 |
Ahg478447 | DRE/CRT-binding protein 2B |
| 32.4037 |
Ahg950508 | temperature-induced lipocalin |
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| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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