| Annotation |
|---|
| Description | jgi|Araly1|496297|fgenesh2_kg.8__2113__AT5G61380.1 |
| Sequence |
ATTGATTGAC AAAACAAAAC TATGAGTCTT CTTTCTCTTC TCACTTCTCT TGTCGGAAAT TCACCTTCTC TCTCTCTCCT CTTCATCTCA CCGCCGGCGT TACGCTGGAT CTCCGGTGAC TTTTGTTGAG CTGTTTTGTC GATTCTTGAT TCGATTTAGC AACAAAAGAA TTTCAGCTCT TTGTTCTTAG ATTTAGCTTA TCTTTTTTGT TCTCATGGAT AAGGAATTAG GTTGGGGGAT TAAAAGAGTA GTTTTTGTTT GGTTGTGAGA TTACTTGACT TTTGTAGAGG ATAAATTAGG TGACTTTGTA GGGACAGTGT ACCGAAAAAC CCTTGTTCTG ATTTGGCCAT GGAAGTATCA TAGCACTTAC TATTGTCGGT TTTATTTGTT CTACTTTTGT ATAATCTTTT TTTTTCTTTT TTGTGTTAGG TTCTGTGATT AGATATTTTT TTGGTGGGTT TAGCTGTTAA TCTTATCATG GATCTGAACG GTGAGTGTAA GGGAGGAGAT GGGTTTATTG ATAGAAGCAG AGTTAGGATT TTGCTTTGTG ACAATGATTC CAAGAGCTTG GGAGAAGTTT TCACTCTCCT TTCAGAGTGT TCTTATCAAG TGACTTCAGT GAAATCAGCA AGGCAAGTGA TTGATGCACT TAATGCAGAG GGACCTGATA TCGATATCAT ACTGGCAGAA ATCGATCTCC CAATGGCCAA GGGTATGAAG ATGCTGAGGT ACATCACACG AGACAAAGAT CTTCGGAGAA TCCCTGTGAT AATGATGTCG AGGCAAGACG AAGTCCCTGT CGTTGTAAAG TGCTTGAAGC TAGGTGCAGC TGACTACCTT GTGAAGCCTC TTCGGACCAA CGAGCTTCTA AACTTGTGGA CACACATGTG GAGAAGAAGA CGCATGCTAG GACTTGCTGA GAAGAATATG TTGAGCTATG ATTTTGATCT CGTGGGATCT GATCCAAGTG ATCCAAACAC AAATAGTACC AACCTGTTCT CTGACGACAC AGATGATAGA AGTCTTAGGT CCACCAACCC GCAGAGAGGA AATTTAAGTC ACCAGGAAAA TGAGTGGTCT GTTGCTACTG CTCCTGTTCA TGCTGGTGAT GGTGGTCTTG GTGCTGATGG AACAGCCACT TCTTCTCTTG CTGTTACTGC TATAGAGCCT CCATTGGATC ATCTTGCTGG GTCTCACCAT GAGCCAATGA AAAGAAATAG TAATCCAGCG CAATTTTCTT CAGCACCAAA GAAAAGTAGA TTGAAGATCG GAGAGTCCTC TGCTTTCTTT ACATATGTCA AATCTACTGT CCTTAGAACT AACGGTCAGG ATCCTCCTCT TGTCAATGGA AATGGCTCAC TTCATCTTCA TCGAGGTTTG GCGGAGAAGT TTCAAGCGGT GGCTAGTGAA GGGATCAACA ACACCAAACA AGCACGCGGA ACAACACCAA AATCTACAGT CCTTAGAACT AACGGTCAGG ATGCTCCTCT TGTCAATGGA TATGGCTCAC TTCATCTTCA TCGAGGTTTG GCGGAAAAGT TTCAAGCGGT GGCTAGTGAA GGGATCAACA ACACTAAACA AGCACGCGGA AGTAGAGAGA CTGAGAAATA CCATTCTCAA GGAGAGAACT TACAGAAGGG TGCCAGCTAT CCATATTCCC TTGAGCGGTC ACGCACGCTT CCCACATCAA TGGAATCTCA TGGTAGGAAC TACCAAGAAG GAAATATGAA TACTCCCCAA GTTGCTATGA ACAGAAGTAA AGATTCGTCT CAAGTTGATG GATCGGGTTT CTCTGCACCA AATGCCTATC CTTACTATAT GCATGGGGTC ATGAACCAAG TTATGATGCA ATCAGCAGCC ATGATGCCAA CCAAATCATC CCCATGGGGT CATCAACTTC CTCATTGCCA ACCAAATCAT CCGAATGGAA TGACGGGATA TCCTTATTAC CACCACCCAA TGAACACATC ACTGCAGCAT AGTCATATGT CTTTACAGAA TGGTCAGATG TCTATGGTTC ATCATTCTTG GTCACCGGTA GGAAATCCGT CTTCTAATGA GGTGAGGGTA AGTAAACTTG ACAGAAGAGA GGAAGCTCTG CTGAAATTTA GACGTAAAAG GAACCAACGG TGTTTTGATA AGAAGATTAG GTATGTGAAT AGAAAACGCC TTGCTGAGAG GAGACCGCGT GTTAAGGGTC AGTTTGTTAG GAAGATAAAC GGGGTGAATG TTGATCTAAA TGGACAGCCT GACTCTGCTG ACTATGATGA CGAGGAAGAG GAGGAAGAAG AAGAAGAGGA AGAGGAGAAC CACAATTCAT CTCCTCAGGA TGATGCTCTG GGAACTTGAA GAAACATCAA GAACTGAAAA CCGTGTTGTG TTATACCTAT TTGCTTGCAT CTTATCAAAC AACACAAGAT GTTGATCGAC TGACACGAAA AGGATGATGC TGCTACAGCC AAAAAAGTTG GCTCTTCTGG CTCAACTTTG GCGGAGCATT GAAAAGCTCT CGTGAGTTTA GCTTAGTTCG TTGATAAATA TATAATGTGT TTTTATCATG TTCACTCACA TTCTCTCAGT AAGAAACTAA GATGTATTAA CCTTTCTTCT CCTTCCAGCA TCATTTACTT GAATCTTGTT TTTCC |
| Length | 2645 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18778361.. 18781889 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G61380.1 |
| Description | CCT motif -containing response regulator protein |
| TAIR curator summary | Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization. |
| Alias | [APRR1][AtTOC1][PRR1][TOC1][TIMING OF CAB EXPRESSION 1][PSEUDO-RESPONSE REGULATOR 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg356828 | cold regulated gene 27 |
| 1.41421 |
Ahg481034 | cold, circadian rhythm, and rna binding 2 |
| 3 |
Ahg491275 | |
| 3.4641 |
Ahg319530 | maternal effect embryo arrest 14 |
| 3.4641 |
Ahg475919 | flavin-binding, kelch repeat, f box 1 |
| 4.3589 |
Ahg471081 | ATP phosphoribosyl transferase 2 |
| 5.2915 |
Ahg950508 | temperature-induced lipocalin |
| 5.74456 |
Ahg910871 | Protein of unknown function (DUF761) |
| 6 |
Ahg952367 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| 6.245 |
Ahg910238 | callose synthase 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|