Detail



ID : Ahg935081

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|935081|scaffold_403069.1
Sequence
CTGAGTAAGA GGAAACCAAA ATGGAGATGG GTTCCAACTC GGGTCCGGGT CATGTTCCGG GTCAGGCAGA GTCTGGTGGT TCCTCCACTG AGTCTTCCTC TTTCAGTGGA GGGCTCATGT TTGGCCAGAA GATCTACTTC GAGGACGGTG GTGGTGGATC CGGGTCTTCT TCCTCTGGTG GTTCAAACAG ACGTGTCCGT GGAGGCGGGT CGGGTCAGTC GGGTCAGATA CCAAGATGCC AAGTGGAAGG CTGTGGAATG GATCTAACCA ATGCAAAAGG TTATTACTCG AGGCACAGAG TTTGTGGAGT GCACTCTAAA ACACCTAAAG TCATTGTTTC TGGTATCGAA CAGAGGTTTT GTCAACAGTG CAGCAGGTTT CATCATCTTG CGGAGTTTGA CCTAGAGAAA AGGAGTTGCC GTAGGAGACT CGCTGGTCAT AATGAACGAC GGAGGAAGCC ACAGCCTGCC TCTCTCTCTG TGTTATCTTC TCGTTACGGG AGGATCGCAC CATCACTTTA CGGAAATGCT GATGCTGGAA TGAATGGAAG CTTTCTTGGG AACCAAGGGA TGGGATGGCC TAGTGAAAGA ACGTTGGATA CAAGAGTGAT GAGACGGCCC GTGTCATCAC CGTCGTGGCA GATCAATCCA ATGAATGTAT TTAGTCAAGG TTCAGTTAAT GGAGGAGGGA CAAGCTTCTC ATCTCCAGAG ATTATGGACA CTAAACTAGA GAGCTACAAG GGAATTGGGG ACTCAAACTG TGCTCTCTCT CTTCTGTCAA ATCCACATCA ACCACAGGAC AACAACAACA CATGGCGAGC TTCTTCAGGT TTTGGCCCCA TGGCGGTTAC AATGGCTCAG CCACCACCTG CACCTAGCCA GCATCAGTAT CTGAACCCGC CTTGGGTATT CAAGGACGAT GATAATGATA TGTCTCCTGT TTTGAATTTG GGTCCGTACA CCGAGCCAGA TAATTGTCAG ATAAGCAGTG GCACAACAAT GGGTGAGTTC GAGTTATCAG ACCACCATCA TCAAAGTAGG AGACAGTACA TGGAAGATGA GAACACAAGG GCTTATGACT CTTCTTCTCA CCATACCAAC TGGTCTCTCT GAGAGAATCT TCTTACAATG AACG 
Length1134
Protein Sequence
Protein Residue
Map Locationscaffold_4: 19577020.. 19578461
Download Sequence
A.thaliana
AGI-codeAT2G42200.1
Descriptionsquamosa promoter binding protein-like 9
TAIR curator summaryEncodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem.
Alias[AtSPL9][SPL9][squamosa promoter binding protein-like 9]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg474258 ABC-2 type transporter family protein
13.2665 Ahg323835 growth-regulating factor 4
15.2971 Ahg920334 homeobox protein 31
15.8745 Ahg479182
17.5784 Ahg495451 CBS domain-containing protein
17.6635 Ahg330654 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
22.8473 Ahg478179 lipid transfer protein 6
23.2164 Ahg321182 Protein kinase superfamily protein
28.9828 Ahg491007 GATA transcription factor 7
34.1174 Ahg481623 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression