| Annotation |
|---|
| Description | jgi|Araly1|937906|scaffold_502097.1 |
| Sequence |
TAGAGAGAGA AACTAGCTCC ATGTTCGAAA CAGAGCATCA TACTCTCTTG CCTCTTCTTC TTCTCCCATC GCTTTTGTCT CTTCTTCTCT TCTTGATTCT CTTGAAAAGA AGAAGTAGAA GAACCAGATT CAATCTCCCT CCGGGTAAAT CCGGTTGGCC ATTTCTTGGT GAAACCATCG GTTATCTTAA ACCGTACACC GCCACAACAC TCGGTGACTT CATGCAACAA CATGTCTCCA AGTATGGGAA GATATATAGA TCGAATTTGT TTGGAGAACC AACGATTGTA TCAGCTGATG CTGGACTTAA TAGATTCATA TTACAAAACG AAGGGAGGCT TTTTGAATGT AGTTATCCTC GAAGTATCGG TGGGATTCTT GGGAAATGGT CGATGCTTGT TCTTGTTGGA GACATGCATA GAGATATGAG AAGTATCTCG CTTAACTTTT TAAGTCACGC TCGTCTTAGA ACCATTCTAC TTAAAGATGT TGAGAGACAT ACTTTGTTTG TTCTTGATTC TTGGAAACAA CACTCTGTTT TCTCTGCTCA AGATGAGGCC AAAAAGTTTA CGTTTAATCT AATGGCGAAA CATATAATGA GTATGGATCC TGGAGAAGAG GAAACAGAGC AATTAAAGAA AGAGTATGTA ACTTTCATGA AAGGTGTTGT CTCTGCTCCT CTCAATCTAC CAGGAACTGC TTATCATAAA GCCCTTCAGT CACGAGCAAC GATATTGAAG TTCATTGAGA GGAAAATGGA AGAGAGAAAA TTAGATATTA AGGAAGAAGA TCAAGAAGAA GAAGTGAAAA CAGAGGATGA AGCAGAGATG AGTAAGAGTG ATCATGTGAG GAAACAAAGA ACAGACGATG ATCTTTTGGG ATGGGTTTTG AAACATTCGA ATTTATCGAC GGAGCAAATT CTCGATCTCA TTCTTAGTTT GTTATTCGCC GGACATGAGA CTTCTTCTGT CGCCATTGCT CTTGCTATCT TCTTCTTGCA AGCTTGCCCT AAAGCCGTTG AAGAGCTTAG GGAAGAGCAT CTTGAGATCG CTAGAGCCAA GAAGGAACTA GGAGAGTCAG AATTAAATTG GGATGATTAC AAGAAAATGG ACTTTACTCA ATGTGTTATA AATGAAACTC TTCGATTGGG AAATGTAGTT AGGTTTTTGC ATCGCAAAGC ACTCAAAGAC GTTCGGTACA AAGGATACGA TATCCCTAGT GGGTGGAAAG TGTTACCGGT GATCTCAGCC GTACATTTGG ATAATTCTCG TTACGACCAA CCTAATCTCT TTAATCCTTG GAGATGGCAA CAGCAAAACA ACGGGACGTC ATCGTCAGGA AGTGGTAGTT TTTCGACGTG GGGAAACAAC TACATGCCGT TTGGAGGAGG GCCAAGGCTA TGTGCTGGTT CAGAGCTAGC CAAGTTAGAA ATGGCAGTGT TTATTCATCA TCTTGTTCTT AAATTCAATT GGGAATTAGC AGAAGATGAT AAACCATTTG CTTTTCCTTT TGTTGATTTT CCTAACGGTT TGCCTATTAG GGTTTCTCGT ATTCTGTAAA AAAAAAAAAA GATGAAAGTA TTTTTATTCC CTTCTT |
| Length | 1596 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 14384894.. 14387848 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G50660.1 |
| Description | Cytochrome P450 superfamily protein |
| TAIR curator summary | Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. |
| Alias | [AtDWF4][CLM][CYP90B1][DWF4][PSC1][SAV1][SNP2][CLOMAZONE-RESISTANT][CYTOCHROME P450 90B1][DWARF 4][PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1][SHADE AVOIDANCE 1][SUPPRESSOR OF NPH4 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg476815 | Chlorophyll A-B binding family protein |
| 12.9615 |
Ahg341076 | myb domain protein 3r-3 |
| 19.799 |
Ahg495700 | RNA-binding KH domain-containing protein |
| 31.225 |
Ahg476762 | Pseudouridine synthase family protein |
| 34.1174 |
Ahg492708 | C-terminal domain phosphatase-like 1 |
| 37.1349 |
Ahg477743 | RNA polymerase II transcription mediators |
| 44.0908 |
Ahg357183 | |
| 46.5403 |
Ahg949638 | nucleotide binding protein 35 |
| 54.2771 |
Ahg492627 | SWIB complex BAF60b domain-containing protein |
| 55.1543 |
Ahg924045 | calpain-type cysteine protease family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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