| Annotation |
|---|
| Description | jgi|Araly1|924045|scaffold_105326.1 |
| Sequence |
TTTGTAGGTG GGAGAAGAAG CCATGGAAGG GGATGAGCGA GGAGTCTTAC TTGCTTGTGT AATTTCGGGT ACCCTTTTCA CGGTTTTCGG TTTGGGTTCG TTTTGGATAC TTTGGGCTGT TAATTGGCGG CCATGGCGGC TCTATAGCTG GATCTTTGCT AGAAAATGGC CAAAAGTATT GCAAGGTCCC CAGCTTGATG CACTATGTGG TGTTCTATCT CTTTTTGCTT GGATTGTGGT AGTATCTCCT ATTGCAATCT TGATAGGGTG GGGTTCCTGG CTGATTTCGA TATTGGATCG AGATATCATT GGGCTTGCGA TAATAATGGC TGGAACAGCC CTTTTACTGG CATTCTACTC AATCATGCTT TGGTGGAGGA CCCAGTGGCA AAGCTCAAGA GCTGTCGCTT TACTTCTCCT TCTTGGTGTT GCCTTACTCT GTGCGTATGA ACTTTGTGCT GTCTATGTTA CGGCTGGTGC GCATGCATCT CAGCAATATT CTCCTTCTGG TTTCTTTTTC GGTGTATCAG CAATCGCGTT GGCAATTAAC ATGCTATTTA TCTGCCGCAT GGTCTTTAAT GGAAATGGGT TAGATGTGGA TGAATATGTA AGGAAGGCAT ATAAATTTGC TTATTCAGAT TGTATAGAAG TGGGTCCTGT GGCTTGTTTG CCAGAACCTC CTGATCCCAA TGAATTATAT CCCCGGCAAA CCAGCAGGGC TTCACATCTT GGCCTCCTGT ACCTGGGCTC ACTCGTAGTT CTCCTTGCCT ACTCAGTCCT ATATGGCCTC ACAGCTAGGG AATCACGTTG GCTTGGAGGA ATTACATCAG CTGCAGTTAT TGTTCTTGAC TGGAATATTG GGGCATGCTT GTATGGGTTT AAGCTTCTTC AGAATCGTGT TCTGGCACTT TTTGTTGCTG GCACATCCCG TCTTTTCCTA ATATGTTTTG GCATACACTA CTGGTACCTA GGGCATTGTA TTAGTTACAT TTTCGTAGCA TCAGTTCTAT CAGGTGCTGC TGTTTCCCGG CATCTATCAG TAACAGACCC ATCAGCTGCA AGAAGAGATG CCTTACAGAG CACAGTGATC CGCTTGAGAG AAGGTTTTCG GAGAAAGGAG CAGAATAGTT CATCAAGTTC TTCAGATGGT TGTGGCTCAA GTATGAAAAG AAGTAGTAGT ATCGATGCTG GCCATGCTGG TTGTACTAAT GAAGCTAATC GTACCGCAGA ATCTTGCACG GCTGACAATC TAACTCGAAC AGGCAGCTCC CAGGAGGGTA TCAATAGCGA GAAAAGCGTA GAAAGTGGAA GACCAAGCTT AGGTTTACGT AGTAATTCAT GTCGTTCTGT GGTCCAAGAG CCCGAAGCAG GAACGTCTTA TTTTCTGGAC AAAGTTTCTG ATCAGAATAA CACTCCTGTT GTTTGTTCTA GCAGTGGTCT AGATAGCCAA GGTTACGAGT CTAGCACATC GAATTCTGCA AACCAGCAGC TTTTGGATTT GAATTTGGCT CTTGCTTTCC AGGACCAGTT AAACGATCCT AGGATAGCCT CGATACTTAA AAAGAAAGCA AAAGAAGGTG ATCTTGAACT CACTAGTTTG CTGCAAGACA AGGGGTTGGA CCCTAACTTT GCTGTAATGC TGAAGGAAAA AAACTTGGAT CCAACTATAT TGGCACTACT TCAGAGGAGT AGTTTGGATG CAGATAGAGA TCACCGCGAC AACACTGATA TTACAATCAT TGACTCAAAC AGTGTTGACA ATACTTTGCC AAATCAGATT TCTTTATCCG AAGAATTGAG ACTCCGTGGA CTAGAGAAGT GGCTTAAGCT GTCCAGACTT CTTCTGCACC ATGTAGCGGG CACACCAGAG AGAGCATGGG GCCTCTTTAG TCTTGTCTTT ATCCTTGAAA CAATCATTGT GGCCATTTTT CGCCCGAAGA CCATCACGAT TATAAATTCT AGTCATCAAC AGTTCGAATT TGGTTTCTCT GTGCTGCTAT TGTCACCTGT TGTCTGTTCA ATAATGGCTT TTCTTCGGTC TCTTCAAGTT GAGGAAATGG CCTTGACATC AAAATCTCGC AAGTATGGCT TTGTTGCCTG GCTTCTGAGC ACTTCAGTTG GATTGTCACT CTCGTTCTTG AGTAAATCGT CAGTACTTCT GGGAATATCC TTGACTGTGC CCCTCATGGC AGCATGCCTG TCTATTGCTG TTCCCATATG GATTCATAAT GGGTACCAAT TTTGGGTACC ACAGTTATCA TGTGGTGACC AGGCAAGAGA TTTACGATCT CCCAGGATAA AGGGGTTTAT TCTTTGGATT TGTGTTGTGT TGTTTGCGGG ATCTGTAATT GCTCTTGGTG CAATTATATC TGCTAAACCT TTGGATGATT TAAAGTATAA GCTGTTTAGT GCCAGAGAAA ACAACGTCAT GTCACCATAT ACATCTTCTG TATACCTTGG TTGGGCAATG GCATCTGGAA TTGCTTTAGT AGTTACCGCC ATTCTGCCAA TAGTTTCATG GTTTGCAACT TATAGGTTTT CCCACTCTTC TGCTGTCTGT CTCATGATAT TCTCAGTTGT TCTCGTGGCA TTTTGTGGAA CATCATATTT GGAAGTTGTG AAATCTAGAG ATGATCAGTT GCCCACAAAG GGTGATTTCC TTGCGGCCTT GCTTCCACTT GCATGCATTC CGGCGCTACT TTCACTATGC TGTGGGATGG TTAAATGGAA GGACGATTGT TGGATACTAT CTCGAGGTGT ATATGTTTTT GTTTCAATAG GTCTTCTTCT TCTTTTTGGT GCAATAGCAG CTGTTATTGC AGTCAAACCA TGGACGATAG GCGTGTCTTT TCTCTTAGTT CTTTTCATTA TGGTGGTAGC AATTGGTGTA ATCTATCTTT GGGCGTCAAA CAATTTCTAT TTGACCAGGA AACAGACATC CTCTGTCTGC TTTCTTGCCC TTCTTTTGGG TTTGGCCGCA TTCCTTGTCG GATGGCATCA AGATAAACCA TTTGCTGGAG CATCTGTTGG TTATTTTACA TTCCTGTCTC TGTTGGCTGG AAGAGCATTA GCTGTTCTTC TATCCCCACC AATTGTGGTA TATTCTCCAA GAGTACTACC AGTATATGTC TACGATGCTC ATGCGGATTG TGGAAAGAAT GTCAGTGCTG CATTTCTTCT TCTGTATGGA ATTGCTTTGG CAACAGAAGG CTGGGGTGTT GTTGCTAGTC TGATAATATA TCCTCCGTTC GCTGGTGCTG CTGTATCAGC TATCACCCTT GTAGTAGCCT TTGGGTTTGC TGTTTCTCGC CCGTGTTTGA CTCTTGAGAT GATGGAGGTT GCTGTACGTT TTCTTAGCAA GGATACTATA GTGCAAGCTA TCTCTCGATC TGCAACGAAA ACAAGAAATG CTCTATCCGG CACGTATTCA GCTCCCCAAA GGTCTGCCAG CTCTGCAGCT CTTCTGGTTG GAGACCCCTC TGCAATGCGT GATAAAGCAG GGAACTTTGT GCTTCCTAGA GATGATGTCA TGAAATTAAG GGATCGTCTC AGGAACGAAG AAAGAGTTGC TGGATCAATC TTCTACAAAA TGCAATGCAG GAAAGGATTC CGTCTTGAAC CACCTTCAAA TGTAGATTAC AGAAGAGACA TGTGTGCCCA TGCAAGAGTT TTGGCGCTGG AAGAGGCAAT TGATACAGAA TGGGTGTATA TGTGGGACAA GTTTGGTGGT TATTTACTCC TATTGTTAGG TTTGACAGCT AAGGCGGAGA TAGTTCAGGA TGAGGTACGG TTGCGGCTCT TCTTAGATAG CATTGGGTTC TCGGACTTAA GTGCCAGAAA AATCAGTAAA TGGAAGCCGG AGGATAGAAG ACAATTTGAA ATTATTCAAG AGAGTTATCT GAGAGAGAAA GAGATGGAAG AGGAAACCCT TATGCAGAGA CGTGAAGAAG AAGGGAGAGG TAAAGAAAGA AGGAAAGCTC TTTTGGAGAA GGAAGAACGC AAATGGAAGG AAATTGAAGC TTCCCTTATT CCATCTATTC CTAATGCTGG TAGCAGGGAG GCAGCAGCCA TGGCAGCTGC AATACGTGCT GTTGGGGGTG ATTCTGTCCT TGAGGATTCC TTTGCAAGAG AGAGAGTCTC GGGTATTGCG CGTAGGATAC GCACTGCTCA ACTAGACCGA CGCGCACAAC AGACTGGAAT ATCTGGGGCA GTTTGTGTTC TTGATGATGA ACCTATGATA AGTGGTAAAC ATTGCGGCCA AATGGACTCA AGTGTCTGTC AAAGTCAGAA GATTAGCTTT TCCGTTACAG CAATGATCCA ATCCGATTCT GGACCTGTAT GTCTTTTTGG CACTGAATTT CAAAAGAAAG TCTGTTGGGA GATTCTGGTT GCTGGTTCTG AACAAGGAAT TGAGGCTGGC CAAGTTGGGC TTAGGTTGAT AACAAAAGGT GAGAGGCAGA CAACCGTGGC TAGAGAGTGG TATATTGGTG CAACCAGCGT AACTGATGGA AGGTGGCATA CAGTGACAAT CACAATTGAT GCTGATGCGG GGGAAGCTAC TTGTTACATA GATGGTGGGT TTGATGGCTA TCAGACTGGG TTACCTCTAA GTACTGGTAG TGCCATTTGG GAACAAGGAG CTGAAGTTTG GTTGGGTGTT AGGCCACCTA TAGATGTTGA TGCATTCGGG AGATCAGATA GTGATGGAGT CGAGTCAAAG ATGCATATTA TGGATGTTTT CCTTTGGGGG AAATGTTTAA GTGAAGACGA GGCCGCTTCT TTGCATGCAG TCATTGGCAT GGCTGACTTA GACATGATTG ATTTGTCTGA TGACAATTGG CAATGGACGG ATTCACCCCC CAGAGTCGAT GGTTGGGATA GTGATCCTGC CGATGTTGAT CTCTATGATA GGGATGACGT AGATTGGGAT GGACAATATT CCAGTGGGAG GAAAAGAAGA TCAGGTCGGG ATTTTGTAAT GAGTGTCGAT TCCTTTGCCA GGAGACACAG GAAACCCAGG ATGGAGACAC AAGAAGATAT AAATCAAAGA ATGCGTTCAG TTGAGTTGGC TGTCAAAGAA GCTCTATCTG CACGAGGTGA TAAGCAATTT ACTGACCAGG AATTTCCTCC AAATGATCGC TCTTTATTTG TGGATACACA AAATCCCCCT TCAAAATTGC AGGTTGTTTC TGAATGGATG AGACCTGACT CCATTGTGAA AGAGAACGGT AGTGATTCCC GTCCCTGCCT GTTCTCTGGG GAAGCAAATC CTTCAGATGT TTGCCAGGGG CGTTTGGGGG ATTGTTGGTT CTTAAGCGCC GTTGCAGTTT TGACAGAAGT ATCACGAATA TCTGAAGTGA TCATTACTCC TGAATACAAC GAGGAAGGGA TCTACACTGT TCGTTTTTGT ATTCAGGGTG AGTGGGTTCC TGTTGTGATC GATGACTGGA TTCCATGTGA ATCGCCTGGT AAACCAGCTT TTGCTACTAG CAAAAAGCTC AATGAACTCT GGGTCTCCAT GGTGGAGAAA GCATATGCCA AGCTCCATGG TTCTTATGAG GCACTGGAGG GGGGACTGGT TCAGGATGCA CTTGTTGACC TAACTGGAGG AGCTGGTGAG GAGATTGACT TGCGGAGTGC TCAAGCACAA ATAGATCTTG CAAGTGGCAG ATTATGGTCT CAATTGTTAC GCTTTAAACA AGAGGGGTTC TTACTTGGAG CTGGAAGTCC ATCAGGATCT GATGTTCATG TATCTTCCAG TGGCATTGTG CAAGGGCATG CTTACTCCGT CTTACAGGTG AGAGAGGTCG ATGGGCACAG ACTTGTTCAG ATCCGGAATC CATGGGCTAA TGAAGTTGAG TGGAATGGTC CATGGTCAGA CTCATCCCCA GAGTGGACTG ATAGGATGAA GCACAAGCTG AAGCATGTTC CACAGTCAAA AGAAGGTATA TTCTGGATGT CTTGGCAAGA TTTCCAGATT CATTTCAGAT CAATATATGT TTGTCGGGTT TACCCCCGTG AGATGCGCTA CTCTGTACAT GGCCAATGGC GAGGTTATAG TGCCGGTGGC TGCCAAGATT ATAGCTCATG GCATCAAAAT CCACAATTCA GGCTGAGGGC AACTGGTTCT GATGCATCTT TGCCAATTCA TGTGTTCATC ACCTTAACTC AGGGCGTAGG TTTCTCAAGA ACAACTCCTG GATTTCGTAA CTACCAATCA AGCCATGATT CACAGTTGTT CTATATCGGA ATGAGGATTC TTAAAACTCG TGGACGTCGT GCTGCTTATA ACATATTTCT TCATGAATCT GTTGGTGGAA CAGACTATGT GAATTCCCGG GAGATATCAT GCGAAATGGT TCTTGACCCT GATCCTAAGG GTTATACTAT TGTCCCAACC ACTATACACC CTGGGGAAGA AGCACCTTTT GTCCTTTCAG TCTTCACAAA AGCATCCATT GTTCTTGAAG CTTTGTAGTG CCCGTATAGT CAGATGGTC |
| Length | 6499 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 27796246.. 27806400 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G55350.5 |
| Description | calpain-type cysteine protease family |
| TAIR curator summary | Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. |
| Alias | [ATDEK1][DEK1][EMB1275][EMB80][DEFECTIVE KERNEL 1][embryo defective 1275][EMBRYO DEFECTIVE 80] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg482091 | ARM repeat superfamily protein |
| 1.41421 |
Ahg326991 | ARM repeat superfamily protein |
| 3 |
Ahg941120 | sister chromatid cohesion 1 protein 4 |
| 5.2915 |
Ahg494201 | binding |
| 5.83095 |
Ahg483241 | Nucleoporin interacting component (Nup93/Nic96-like) family protein |
| 6 |
Ahg898366 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases |
| 6.245 |
Ahg941983 | |
| 6.245 |
Ahg487064 | Pentatricopeptide repeat (PPR) superfamily protein |
| 6.48074 |
Ahg338250 | LRR and NB-ARC domains-containing disease resistance protein |
| 7.2111 |
Ahg943535 | MUTS homolog 6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|