Detail


ID : Ahg938971

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|938971|scaffold_503162.1
Sequence
GGGAGTCGAA GAAGACTGGC GATGAAGCCT TCCGTAGGGC GTGAACCAAA CGGATCTGGA TTTCAATCGA ACAATCTCTG GGTCGGTAGT TTGACAACCG ATACTACAGA ATCCGATCTA GCCGATTTGT TTGGAAGATT TGGTGAAATT GATAGAATCA CGGCGTTTTC TTCCCGTAGC TTCGCGTTTA TCTACTACAG ACGTGTTGAA GAAGCTGTGG CGGCGAAAGA GGCGCTTCAA GGTGCTGATT TGAATGGGAG TCAGATTAAG ATCGAATTCG CTCGACCGGC AAAACCTTGT AAGAGTCTTT GGGTGGGTGG AATCAGCCCG AGTGTTTCAA AGGATGACCT GGAGGCAGAG TTCAGGAACT TTGGCAAAAT CGAAGATTTC AGGTTTCTTA GGGAACGCAA GACGGCTTTT ATTGACTTTT ATAACATGGA AGATGCTATA GCGGCAAAGA ACATGAACGG AAAGAGAATG GGAAATAGCT ATTTGCGAGT TGATTTTCTT CGGTCACAAG GGCCACAAAA AGAACCATGG CCTGGCTCTA ATGATGGCAG GGATGGCAGT TTGAGTACTA AACAACAGTA TCCTCACTCA TTCGGAGATG CTGAAGGAGA ACGCCGACCA AGTAATGTAC TGAGGATTGG ATACCCTCCT TCTGTTCAGA TTGACGAGCA AACACTACAC AATTGTATGA TACTCTTTGG TGAGATTGAG AGATGTAATA GTTACCCATC AAGGCATTTC TCACTTGTGG AATTTAGAAG CATTGAGGAA GCTCGTTGTG CTAAGGAAGG ACTACATGGA AGGTTACTCA ATGATCCAAG AATCACAATA ATGTACTCGA ATGATGACAT TCCCCCTGGA CGAGGAGATG ATACCAGTTT TTATTCTGGT GCCAAACGAT CAAGGCCTGA GATGTTCGTC AATGATCCTC CATTCATCTC GTCACCGCAT TCTAGTGGGT TTTTTGGCTC TATGAGGCCC TTTCGAGGAA GCGTTGAACG TTCACATAGT GGTCCAGAAT ATAGCGATGT GGTTGGTACA GAAGAAAGCT GGGGGAGGCC ATCTCCAACT GAAGCTGGAA AATCTGGAAT ACTCCCGTCT CCTGCACCAC ATACAATGCT ACCTGTTAGG TCAAACCGTG GTTCTTGGGA AGGATATGAT CCTGCTCAGT TGGATAGAGA ACCCAAAAGA ACCCGTAGAG ATGGATCAGT GGATGTTTTT CCTTCAATGA GTGTAGATGA CCGTGTCACT GGGTTTGACA GGACATACGG GCGTGGGTCA GTTGCAGCCA GGTCCGGCCG TGGTTTCCCT GATACTGATT TCATTTGGAG AGGAATCATT GCCAAAGGTG GAACTACTAT TTGTCGTGCT CGTTGTGTAC CTTTCGGAAA GGGGACTGAA ACTGAACTCC CTGAGATCGT CAATTGTTCA GCAAGAACGG GTTTGGATAT GCTTGCCAAA CATTACACCG AAGCCATTGG ATTTGAAATC GTTTTCTTCT TACCAGACAG GGAAGACGAT TTCGCGTCTT ATACTGAATT CCTCTGCTAC CTTGGTTCAA AAAATCGAGC AGGTGTGGCC AAATTAGACG ATGGAACCAC TTTATTTTTG GTTCCTCCAT CAGATTTCTT AACTGATGTG CTCAAAGTGT CGGGTCCAGA ACGGTTATAT GGTGTTGTTC TCAAGTTGCC CCCACCACAG GTTCCTGCCG CAGCATCGTA TAAACAAGAA CCTTATCCCA TTCCTCAATC TTATATGGGT CAATCTCGGA GTTTGCCTGC CAATGCCAAT AATGGTTTGT TCGCTGCTAG AGAAGACCGA GCTGTGTTTG AATATAATAG AGGTATGCAG AAAGAATCAA AGCCTTCTCC AAAATCATTG CTTGGTCCTT TGAGCGAATC TGTTTCTGTA CCTAATACTG CAATGCCTCA AGCTGGGGTT AGTCTAACGC CTGAGCTATT AGCCACTCTG GCCTCCTTGC TCCCCACAAC TTCTCAACCT ACTGCCTCTG AAAGTCACCA GTCCGTTGGA CTATCCAGTG GAGAAGCTCC ATCACAAGCT TGGAATCGAG ATCAATCGAC GGTCTCTGAC CCATCAAATC TATCATTCCA ACAATTAGGC AATCAATACA ATCCGATGGG GCAACTACCC CCTCCTCCCC CTCTTCCTCC TCCTCCGATG CGTTATCCTC CGGTGTCAAG CACACCGAGC TACTCCAGTG GAATGGTCCA TGGTGGTATG CAATATCAAG CACCATTTGT TAGCACACCT CAGCAAGCTC CGTTACCTAC TCCTCCATCG AGTAATTATG CAATGTACTC TCAAGGTTCA CATCAAGCTG TTTCTCAACC CTTGAGACAG CAATATCAGC CTGAAGCTCC CATGCTTAAC CAAAACTACA TACCGGTCCC TGGAGCTGAG AATCCTGTTT TGCATGGTTA CCAGCAAGGT AATTATCACT GTCTGACAAA TAATCAAGCG CATAACGCAA ACCCTTCCCA ATCTCAAATT GCGATGCCAC CACCAGCGAA CATGAAAAAG TTGGATCCGT CTAGCCAAGC ACAGCAGCAG CTCCAGCCTT TGCTCCTTGG AGCTGGACAA GGTATGTCAG ATGGTGAGGT CGATAAGAAC CAGCGATATC AATCTACTCT GCAGTTTGCG GCTAACCTTC TTCAACAGAT TCAGCAACAG CAGCAACTGC CATCAGATGC TTCGACTGTT CAAGGCCCTT GAGAAGCTCC ACATCCCTTA AT
Length2762
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT2G43410.2
DescriptionRNA binding
TAIR curator summaryFPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.
Alias[FPA]
Gene coexpression
MR
MR Locus Description
3.16228 Ahg316265 global transcription factor group E3
5.38516 Ahg934248 pentatricopeptide (PPR) repeat-containing protein
7.14143 Ahg487184 Patatin-like phospholipase family protein
7.48331 Ahg471548 ELM2 domain-containing protein
10.6771 Ahg485021 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
12.6095 Ahg470756 RNA-binding (RRM/RBD/RNP motifs) family protein
16.7033 Ahg944394 Basic-leucine zipper (bZIP) transcription factor family protein
22.9783 Ahg471472 RNA-binding (RRM/RBD/RNP motifs) family protein
25.807 Ahg949711 hydroxyproline-rich glycoprotein family protein
27.7128 Ahg473691
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression