| Annotation |
|---|
| Description | jgi|Araly1|940194|scaffold_600738.1 |
| Sequence |
ATAAGGTCTT AGCCAGTGAA CATGGCAACA ACGACTGAGA ACCAATGGCT TAAAGGAAGA GTGAAGGCTG TTACCTCCGG AGACTGCTTA GTGATCACGG CTTTGAGCCA CAACAGAGCT GGACCTCCAC CGGAAAAGAC CATTACTTTA TCTTCTCTTA TGGCACCTAA GATGGCTCGC AGAGGAGGTA TAGATGAGCC TTTTGCATGG GAAAGCAAGG AATTTTTGAG GAAACTTTGC ATAGGAAAGG AGGTTGCATT CAAAGTTGAT TACAAAGTGG AAGCTATTGC TGGAAGAGAA TTTGGCTCTG TATTCCTTGG CAATGAGAAT CTTGCTAAGC TTGTTGTTAA AAATGGTTGG GCAAAGGTTA GGGAGCCAGG TCAGCAGAAT CAGGATAAGG TTAGTCCTTA CATTAAAGAG TTGCTACAGC TCGAAGAGCA GGCCAAGCAG GAAGGATATG GTCGTTGGAG CAAAGTTCCT GGTGCTGCTG AGGCATCTAT CAGAAACCTT CCTCCTTCTG CCATTGGGGA TTCTGCTGGC TTTGATGCCA TGGGCCTTTT AGCTGCAAAC AAGGGCAAGC CTATGGAAGG TATTGTGGAG CAAGTGCGTG ATGGAAGTAC TATTCGGGTT TATCTTCTTC CAGAGTTCCA GTTTGTGCAA GTATTTGTTG CGGGAGTTCA GGCTCCATCT ATGGGAAGGC GAACCACAAA TGGAAGTGTT GTTGAGACAG TTCCAGATGA GCCGAATGGA GATGTTTCTG CTGAGTCACG AGGTCCTCTA ACGTCAGCTC AGAGACTTGC TGCCTCTGCA GCATCGTCTG AGGTTTCCTC TGATCCATTT GCAACTGAAG CCAAGTACTT TACCGAGCAC CGTGTTCTTA GTAGAGATGT TCGCATTATT CTTGAAGGCG TTGACAAATT CAACAATCTG ATTGGTTCAG TTCATTATTC TGATGGGGAA ACAGTTAAAG ACTTGGGTTT GGAGCTCGTT GAAAATGGTC TTGCGAAATT TGTTGAATGG AGTGCTAACA TGATGGAGGA TGAAGCTAAG AGAAAGTTGA AAGCTGCAGA ACTTCAATGC AAGAAAGATA AGGTTAAAAT GTGGGGAAAC TACGTTCCTC CAGCTACAAA CTCGAAGGCA ATTCATGACC AGAACTTTAC GGGAAAGGTA GTGGAAGTGG TGAGTGGGGA TTGTCTTATA GTTGCCGATG ATGCTATTCC ATTTGGGAGT CCAGCGGCAG AGAGACGGGT CTGTCTTTCG AGTATCAGAT CTCCCAAGAT GGGCAACCCA CGCCGAGAAG AGAAACCAGC TCCTTATGCT CGGGAAGCAA GAGAATTTCT GAGACAACGG CTTATTGGCA AACAGGTTAT TGTTCAAATG GAATACTCAA GGAAAGTCAC CCAAGGAGAT GGTCCTACCA CATCTGGAGC TGCTAATAGG TTCATGGATT TTGGCTCAGT GTTCCTTCCA TCTCCTGCCA AAGGCGATTC TGATGAAGTG GCTGCATCAT CTGCTGCAGC AATTAATGGC AGTCATCCGG TTGGTGTGAA TATTGCTGAG CTCGTTCTTG CCCGTGGTTT TGGAAATGTG GTTAGACATA GAGATTTTGA AGAGCGATCA AACCATTATG ATGCTCTTCT GGCTGCTGAA GCTCGTTCTC TGTCTGGAAA GAAAGGAATC CATTCTGCAA AAGAATCTCC AGCCATGCAC ATCACAGACC TAACTGTGGC GGCAGCTAAG AAAGCTAAAG ATTTCCTGCC ATCCTTGCAA AGAATCAGGA GAATACCCGC TGTTGTGGAA TATGTCCTCA GCGGACATCG GTTTAAGCTT TATATCCCAA AGATAACATG CAGCATTGCC TTTTCATTCT CTGGTGTCAG ATGTCCTGGC CGTGGCGAAC CTTATTCAGA AGAGGCTATC TCTGTAATGA GACGGAGGAT CATGCAGAGA GATGTTGAGA TTGAAGTTGA AACCGTGGAT AGAACCGGTA CTTTCTTGGG ATCCATGTGG GAGTCGAGGA CGAATGTGGC AACAGTTCTG CTTGAAGCTG GCTTAGCAAA AATGCAGACT AGCTTTGGTG CAGACAGGAT CGCCGAAGCA CATCTTCTTG AACAGGCCGA GAGATCTGCT AAAAACCAGA AACTGAAGAT TTGGGAAAAC TATGTTGAAG GAGAAGAAGT CTCAAACGGA AATACAAATA CCGTAGAAAC CAGGCAAAAG GAGATCTTAA AGGTTGTTGT TACAGAAGTA CTTGGAGGTG GTCGGTTCTA TGTTCAATCT GCTGGAGATC AGAAAGTAGC TTCGATTCAG AACCAGCTTG CATCCTTGAG TATTAAAGAC GCTCCCATTA TCGGGTCCTT TAATCCAAAG AGAGGTGACA TCGTCCTTGC ACAGTTTAGC CTTGATAACT CCTGGAACCG TGCAATGATT GTGACTGCAC CCCGAGCAGC GGTTCAATCC CCAGATGAAA AATTCGAAGT GTTCTACATC GATTATGGAA ACCAGGAGAC AGTTCCATAC AGCGCAATCA GACCAATAGA CCCTTCGGTA TCTGCAGCAC CAGGGCTCGC TCAGCTCTGC AGACTTGCCT ACATAAAGGT TCCAAGCTTG GAAGAAGACT TTGGTGCTGA AGCCGGAGAG TATTTGCATA CGGTAACGCT GGGTAGTGGT AAAGAGTTCA AAGCAGTGAT AGAAGAAAGA GACACATCTG GAGGCAAAGT CAAAGGGCAA GGAACTGGAA CTGAATTCGC TGTCACACTC ATTGCTGTCG ATGATGAGAT CTCTGTAAAC GCTGCAATGC TTCAGGAAGG AATAGCGAGA ATGGAGAAAC GTAAGAAATG GGGGCACAAA GACAAACAAG CTGCTCTTGA TGCTTTAGAG AAGTTCCAAG AGGAAGCTCG CAAGTCGAGA ATTGGAATCT GGCAGTACGG TGACATTGAG TCCGATGATG AGGACACTGG TCCGGCCAGA AAACCTGCTG GTGGTCGCCG GTAAATTATA AAACCGATAA GTCGT |
| Length | 3015 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 2754007.. 2758598 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G07350.2 |
| Description | TUDOR-SN protein 1 |
| TAIR curator summary | RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2. |
| Alias | [AtTudor1][TSN1][Tudor1][Arabidopsis thaliana TUDOR-SN protein 1][TUDOR-SN protein 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg478454 | Clathrin, heavy chain |
| 7.34847 |
Ahg487692 | 51 kDa subunit of complex I |
| 12 |
Ahg938338 | Transducin/WD40 repeat-like superfamily protein |
| 14.9666 |
Ahg471140 | dynamin-like protein 6 |
| 17.4929 |
Ahg473387 | SCAMP family protein |
| 18.868 |
Ahg486056 | eukaryotic translation initiation factor 3C |
| 20.1246 |
Ahg939446 | transducin family protein / WD-40 repeat family protein |
| 21.7715 |
Ahg472481 | Class-II DAHP synthetase family protein |
| 24.0832 |
Ahg478791 | Root hair defective 3 GTP-binding protein (RHD3) |
| 24.3721 |
Ahg489215 | Mov34/MPN/PAD-1 family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|