| Annotation |
|---|
| Description | jgi|Araly1|940448|scaffold_600992.1 |
| Sequence |
TGTGGAAGCT GGTACATCTA GAATGGATAC ATTTAGAGAT GCTATATTGC AACGAGCTCC TATTGAAAGC TTTGCACTCA AGACTGTTCA ACAGTTTATA CAACCTCAGA AACAAACAAA GTTGGCCCAA GATGAAAACC AAATGCTTGA AAACATGCTC CGGACATTGC TGCAGGACCT AGTGGCTGCT GCTGCGCAAT CAGGAGAGCA AATTATGCAG TATGGTCAGT TGATTGATGA TGATGATGAT AATATACATG GCCAGATTCC TCATCTTCTA GATGTTGTGC TTTATCTTTG TGAGAAAGAG CATGTAGAAG GTGGCATGAT ATTCCAGCTG CTGGAGGATT TGACCGAAAT GTCTACTATG AAAAATTGTA AAGATGTTTT CGGTTATATT GAAAGCAAAC AAGATATATT GGGCAAGCAA GAGCTGTTTG CACGCGGAAA ACTTGTAATG TTGAGGACTT GCAACCAACT TCTCCGGCGA CTCTCAAAGG CCAATGATGT TGTATTCTGT GGAAGGATTC TCATGTTTTT GGCTCACTTT TTTCCGTTAT CTGAGCGCTC AGCCGTGAAT ATAAAAGGCG TTTTTAATAC ATCTAATGAA ACCAAATATG AAAAAGATCC TCCAAAAGGC ATTTCTGTAG ATTTCAACTT CTATAAGACA TTTTGGAGTT TACAGGAGTA TTTCTGTAAT CCCGCTTCTC TTACTTCCGC ATCTACCAAG TGGCAGAAAT TTTCATCCAG TTTGGCGGTT GTTTTAAACA CCTTTGATGC TCAACCACTA AGCGAAGAAG AGGGAGAGGC TAATAGTTTG GAGGAAGAGG CAGCAACTTT TAATATAAAG TACCTAACAA GTAGTAAATT GATGGGTTTA GAGTTAAAGG ATTCGAGTTT CCGACGACAT ATTCTTCTCC AGTGCCTCAT TATGTTTGAT TATCTGAGGG CACCAGGGAA GAACGACAAA GATCTGCCAT CTGAAACCAT GAAGGAAGAA CTTAAGTCAT GTGAGGATCG TGTAAAGAAA TTGCTTGAGA TCACTCCGCC TAAAGGGAAA GAATTCCTCC GTGCAGTTGA GCATATACTG GAGCGCGAAA AGAATTGGGT CTGGTGGAAA CGTGATGGAT GCCCACCATT TGAAAAGCAA CCGATAGATA AGAAATCACC TAATGCAGGG CAAAAGAAAC GGAGACAAAG ATGGAGATTG GGCAATAAAG AACTCTCCCA ACTTTGGAGA TGGGCTGATC AAAATCCGAA TGCTTTGACT GATTCTCAAC GTGTCCGAAC CCCTGACATT GCAGACTACT GGAAACCATT AGCAGAAGAT ATGGATCCAT CAGCTGGCAT AGAAGATGAG TATCATCATA AAAACAACAG AGTTTACTGC TGGAAAGGTC TTCGGTTTAC AGCTCGGCAA GACCTTGAAG GATTTTCTAG GTTTACCGAA ATGGGAATCG AAGGAGTTGT CCCAGTTGAA CTATTGCCGC CTGAGGTCCG GTCCAAATAC CAAGCTAAAC CGAACGAAAA AGCCAAACGA GCTAAGAAAG AAGAAGCCAA AGGTGGATCT CAGGAAACAG AGGGAAACCA GATTGGTGTT TCTAATAGTG AAGCTGAAGC TGAAGGAGGA AGGGGTGATG CAGAGACGAT GGAGAGTGAT GCTATTGCAG ACACTCCTAC GCCTGAGGAA CAACAAAGAC TCGGTGTTTC TGACACAGAA AACGGTCAAG AGGCTGGTCA AATCGAAGAC GCAGAGACAG AAGAAGCTGG TTTGATGGAC ACTGATCTTG ATCACCCCAC TATGCCTGTC TCATGAGACT CGACCTTCAT GGAACG |
| Length | 1836 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 3738238.. 3742262 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G09860.1 |
| Description | nuclear matrix protein-related |
| TAIR curator summary | Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. |
| Alias | [AtHPR1][AtTHO1][HPR1][THO1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg922444 | D111/G-patch domain-containing protein |
| 3.87298 |
Ahg491053 | GTP-binding 2 |
| 4.24264 |
Ahg942565 | F-BOX WITH WD-40 2 |
| 4.47214 |
Ahg475153 | Chaperone DnaJ-domain superfamily protein |
| 4.89898 |
Ahg496258 | |
| 6.48074 |
Ahg481505 | |
| 14.8324 |
Ahg484013 | Lung seven transmembrane receptor family protein |
| 18.6548 |
Ahg479648 | dentin sialophosphoprotein-related |
| 19.799 |
Ahg910852 | WAPL (Wings apart-like protein regulation of heterochromatin) protein |
| 23.8747 |
Ahg947562 | RING/U-box superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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